Author details

Full Name

Andreas Gnirke

Affiliation

The Center for Genome Architecture, Baylor College of Medicine

ORCID

Career Start Year

1986

Papers

113

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37327786	DNA hypomethylation silences anti-tumor immune genes in early prostate cancer and CTCs.	Cell	2023
38032990	A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing.	PLoS One	2023
37289095	Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen.	Microbiol Resour Announc	2023
33303686	Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events.	Science	2021
33604581	Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy.	Blood Cancer Discov	2021
34686499	Activation of <i>Notch</i> and <i>Myc</i> Signaling via B-cell-Restricted Depletion of <i>Dnmt3a</i> Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia.	Cancer Res	2021
34244697	Smart-RRBS for single-cell methylome and transcriptome analysis.	Nat Protoc	2021
33972312	Discovery of Candidate DNA Methylation Cancer Driver Genes.	Cancer Discov	2021
32514123	TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers.	Nat Genet	2020
32938797	Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect.	Sci Transl Med	2020
32869040	Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.	medRxiv	2020
30718881	Capturing sequence diversity in metagenomes with comprehensive and scalable probe design.	Nat Biotechnol	2019
31348885	Small Molecule Targets TMED9 and Promotes Lysosomal Degradation to Reverse Proteinopathy.	Cell	2019
31015400	Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL.	Nat Commun	2019
31092926	Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia.	Nature	2019
29426832	Genome-wide tracking of dCas9-methyltransferase footprints.	Nat Commun	2018
30337375	Comparative genomic analysis of embryonic, lineage-converted and stem cell-derived motor neurons.	Development	2018
30468428	Targets and genomic constraints of ectopic Dnmt3b expression.	Elife	2018
29581568	Author Correction: Global delay in nascent strand DNA methylation.	Nat Struct Mol Biol	2018
29551301	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology.	Cell Stem Cell	2018
29358654	Genetic determinants and epigenetic effects of pioneer-factor occupancy.	Nat Genet	2018
29656892	Cancer-Germline Antigen Expression Discriminates Clinical Outcome to CTLA-4 Blockade.	Cell	2018
29531288	Global delay in nascent strand DNA methylation.	Nat Struct Mol Biol	2018
28746311	Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells.	Nature	2017
28405027	Virus genomes reveal factors that spread and sustained the Ebola epidemic.	Nature	2017
28959968	Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer.	Nature	2017
28538734	Zika virus evolution and spread in the Americas.	Nature	2017
28538723	Genomic epidemiology reveals multiple introductions of Zika virus into the United States.	Nature	2017
25794114	Patient satisfaction in out-of-hospital emergency care: a multicentre survey.	Eur J Emerg Med	2016
27980681	Targeted bisulfite sequencing of the dynamic DNA methylome.	Epigenetics Chromatin	2016
27157321	Development and Validation of a Mass Spectrometry-Based Assay for the Molecular Diagnosis of Mucin-1 Kidney Disease.	J Mol Diagn	2016
25533951	Dissecting neural differentiation regulatory networks through epigenetic footprinting.	Nature	2015
26276630	Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.	Cell	2015
26499245	Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.	Proc Natl Acad Sci U S A	2015
26091036	Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.	Cell	2015
25693565	Transcription factor binding dynamics during human ES cell differentiation.	Nature	2015
25730492	Simultaneous generation of many RNA-seq libraries in a single reaction.	Nat Methods	2015
25822089	Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells.	Nat Genet	2015
25742749	Notch-mediated expansion of cord blood progenitors: maintenance of transcriptional and epigenetic fidelity.	Leukemia	2015
24914046	Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes.	Nucleic Acids Res	2014
25490447	Locally disordered methylation forms the basis of intratumor methylome variation in chronic lymphocytic leukemia.	Cancer Cell	2014
25214632	Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak.	Science	2014
25403361	Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.	Genome Biol	2014
23396133	Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing.	Nat Genet	2013
23925113	Charting a dynamic DNA methylation landscape of the human genome.	Nature	2013
23664763	Transcriptional and epigenetic dynamics during specification of human embryonic stem cells.	Cell	2013
23685885	Comparative analysis of RNA sequencing methods for degraded or low-input samples.	Nat Methods	2013
23685454	Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.	Nature	2013
23598338	The African coelacanth genome provides insights into tetrapod evolution.	Nature	2013
23791531	Cellular source and mechanisms of high transcriptome complexity in the mammalian testis.	Cell Rep	2013

1 - 50 of 113

Marta Gut

Universitat de Barcelona (UB)

Career Start Year 2010

Number of shared co-authors 16

Nozomu Yachie

The University of British Columbia

Career Start Year 2006

Number of shared co-authors 0

Yaron S Butterfield

Brain Tumour Foundation of Canada

Career Start Year 2002

Number of shared co-authors 23

John Aach

Harvard Medical School

Career Start Year 2000

Number of shared co-authors 2

Kirsten McLay

Inivata Ltd.

Career Start Year 1999

Number of shared co-authors 52

Sarah J Wheelan

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1998

Number of shared co-authors 14

David R Powell

Biomedicine Discovery Institute, Monash University

Career Start Year 1998

Number of shared co-authors 0

Vincent Magrini

The Ohio State University

Career Start Year 1997

Number of shared co-authors 19

Jay Shendure

University of Washington

Career Start Year 1996

Number of shared co-authors 27

Robert A Holt

BC Cancer Research Institute

Career Start Year 1996

Number of shared co-authors 89

Ping Liang

College of Chemistry and Chemical Engineering, Hunan University

Career Start Year 1995

Number of shared co-authors 2

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 113

Lucinda Fulton

McDonnell Genome Institute, Washington University School of Medicine

Career Start Year 1994

Number of shared co-authors 97

Marie-Laure Yaspo

Max Planck Institute for Molecular Genetics

Career Start Year 1992

Number of shared co-authors 6

Samuel Levy

Bluestar Genomics Inc.

Career Start Year 1991

Number of shared co-authors 6

Joakim Lundeberg

KTH Royal Institute of Technology

Career Start Year 1990

Number of shared co-authors 12

Dieter Weichenhan

German Cancer Research Center (DKFZ)

Career Start Year 1988

Number of shared co-authors 7

Ian Dunham

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1987

Number of shared co-authors 41

John D McPherson

Ontario Institute for Cancer Research

Career Start Year 1986

Number of shared co-authors 59

Jiannis Ragoussis

McGill University

Career Start Year 1986

Number of shared co-authors 5

James C Mullikin

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1985

Number of shared co-authors 69

Eric D Green

National Human Genome Research Institute, National Institutes of Health

Career Start Year 1984

Number of shared co-authors 64

Stephan Beck

UCL Cancer Institute, University College London

Career Start Year 1983

Number of shared co-authors 61

Richard K Wilson

The Ohio State University

Career Start Year 1983

Number of shared co-authors 119

Yoshihide Hayashizaki

Center for Integrative Medical Sciences

Career Start Year 1983

Number of shared co-authors 47

Richard M Myers

HudsonAlpha Institute for Biotechnology

Career Start Year 1980

Number of shared co-authors 54

George M Church

Harvard Medical School

Career Start Year 1977

Number of shared co-authors 20

Thomas R Gingeras

Stanley Institute for Cognitive Genomics

Career Start Year 1974

Number of shared co-authors 37

Norma Neff

Stanford University

Career Start Year 1974

Number of shared co-authors 1

Ronald W Davis

Stanford University

Career Start Year 1968

Number of shared co-authors 22

row(s) 1 - 30 of 30

Alexander Meissner

Co-authored papers 40

Hongcang Gu

Co-authored papers 34

Chad Nusbaum

Co-authored papers 22

Eric S Lander

Vanderbilt-Ingram Cancer Center, Vanderbilt University

Co-authored papers 22

Zachary D Smith

University of Maryland Baltimore County

Co-authored papers 15

Bradley E Bernstein

Broad Institute of MIT and Harvard

Co-authored papers 11

David B Jaffe

Co-authored papers 11

Aviv Regev

Broad Institute of MIT and Harvard

Co-authored papers 11

Tarjei S Mikkelsen

Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute

Co-authored papers 11

Adrianne Gladden-Young

Co-authored papers 10

Pardis C Sabeti

Harvard University

Co-authored papers 10

Christoph Bock

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Co-authored papers 10

Bruce W Birren

Broad Institute of MIT and Harvard

Co-authored papers 9

Daniel J Park

Broad Institute of MIT and Harvard

Co-authored papers 8

Stephen F Schaffner

Broad Institute of Massachusetts Institute of Technology (MIT) and Harvard

Co-authored papers 8

Catherine J Wu

Co-authored papers 8

Nir Friedman

Co-authored papers 6

Alexander M Tsankov

Co-authored papers 6

Tim Fennell

Co-authored papers 6

Robert F Garry

Tulane University School of Medicine

Co-authored papers 6

Shirlee Wohl

The Scripps Research Institute

Co-authored papers 6

Stacey Gabriel

Broad Institute of MIT and Harvard

Co-authored papers 6

Nir Hacohen

Broad Institute of MIT and Harvard

Co-authored papers 6

Manuel Garber

Co-authored papers 5

Dan A Landau

Co-authored papers 5

John L Rinn

Co-authored papers 5

Kerstin Lindblad-Toh

Uppsala University

Co-authored papers 5

Andrew Rambaut

Institute of Ecology and Evolution, University of Edinburgh

Co-authored papers 5

Donna Neuberg

Co-authored papers 5

Ido Amit

Weizmann Institute of Science

Co-authored papers 5

1 - 30

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