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Author Details

Takatomo Fujisawa
National Institute of Genetics
2001
48
20
PMIDPaper TitleJournal TitlePublished Year
37971299DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata.Nucleic Acids Res2024
36420889DNA Data Bank of Japan (DDBJ) update report 2022.Nucleic Acids Res2023
37839865SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan.Genes Genet Syst2023
34751405DNA Data Bank of Japan (DDBJ) update report 2021.Nucleic Acids Res2022
36539398The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan.Hum Genome Var2022
33156332DDBJ update: streamlining submission and access of human data.Nucleic Acids Res2021
33526179Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204<sup>T</sup> and detailed analysis of secondary metabolite gene clusters.Harmful Algae2021
34677568Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade.DNA Res2021
32213716DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences.Genes Genet Syst2020
31724722DDBJ Database updates and computational infrastructure enhancement.Nucleic Acids Res2020
32308977BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Res2020
30624651TogoGenome/TogoStanza: modularized Semantic Web genome database.Database (Oxford)2019
31020563Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.Methods Mol Biol2019
29106469DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.Bioinformatics2018
29449379Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium <i>Nostoc cycadae</i> Strain WK-1, Isolated from the Coralloid Roots of <i>Cycas revoluta</i>.Genome Announc2018
27924010DNA Data Bank of Japan.Nucleic Acids Res2017
28385852Complete Genome Sequence of a Coastal Cyanobacterium, <i>Synechococcus</i> sp. Strain NIES-970.Genome Announc2017
28234924DNApod: DNA polymorphism annotation database from next-generation sequence read archives.PLoS One2017
27899668CyanoBase: a large-scale update on its 20th anniversary.Nucleic Acids Res2017
26784989Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools.J Biotechnol2016
26656223Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering.J Biotechnol2016
26578571DNA data bank of Japan (DDBJ) progress report.Nucleic Acids Res2016
27867804DFAST and DAGA: web-based integrated genome annotation tools and resources.Biosci Microbiota Food Health2016
27999625Genome sequence and overview of <i>Oligoflexus tunisiensis</i> Shr3<sup>T</sup> in the eighth class <i>Oligoflexia</i> of the phylum <i>Proteobacteria</i>.Stand Genomic Sci2016
27365350Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water.Genome Announc2016
27296299FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.J Biomed Semantics2016
26988037Complete Genome Sequence of Cyanobacterium Leptolyngbya sp. NIES-3755.Genome Announc2016
25416288Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.Plant Cell Physiol2015
25897122The BioMart community portal: an innovative alternative to large, centralized data repositories.Nucleic Acids Res2015
25973165Implementation of linked data in the life sciences at BioHackathon 2011.J Biomed Semantics2015
25477381The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.Nucleic Acids Res2015
24194602DDBJ progress report: a new submission system for leading to a correct annotation.Nucleic Acids Res2014
25523770Complete Genome Sequence of Bifidobacterium longum 105-A, a Strain with High Transformation Efficiency.Genome Announc2014
25013139Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains.Genome Announc2014
25169865Draft Genome Sequence of Lactobacillus oryzae Strain SG293T.Genome Announc2014
24865297Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.Nat Commun2014
24275496CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.Nucleic Acids Res2014
24495517BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.J Biomed Semantics2014
23193255H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.Nucleic Acids Res2013
22452844Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs.Microbes Environ2012
21930507BioMart Central Portal: an open database network for the biological community.Database (Oxford)2011
21806842The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.J Biomed Semantics2011
19880388CyanoBase: the cyanobacteria genome database update 2010.Nucleic Acids Res2010
20203057Genomic structure of an economically important cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.DNA Res2010
18408034Complete genome sequence of the soil actinomycete Kocuria rhizophila.J Bacteriol2008
16423019Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.Environ Microbiol2006
15057705Use of segment-based microarray in the analysis of global gene expression in response to various environmental stresses in the cyanobacterium Anabaena sp. PCC 7120.J Gen Appl Microbiol2004
11858227Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120.DNA Res2001
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Collaborators

Toshiaki Katayama
Database Center for Life Science
Co-authored papers 11
Shuichi Kawashima
Database Center for Life Science, Joint Support-Center for Data Science Research
Co-authored papers 6
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 4
Raoul J P Bonnal
National Institute for Molecular Genetics "Romeo ed Enrica Invernizzi"
Co-authored papers 4
Kiyoko F Aoki-Kinoshita
Co-authored papers 3
Joachim Baran
Stanford Center for Biomedical Informatics Research, Stanford University
Co-authored papers 3
Rutger A Vos
Naturalis Biodiversity Center
Co-authored papers 3
Mark D Wilkinson
Universidad Politecnica de Madrid (UPM)
Co-authored papers 3
Arek Kasprzyk
European Bioinformatics Institute (EBI)
Co-authored papers 3
Todd W Harris
Ontario Institute for Cancer Research
Co-authored papers 3
Jerven Bolleman
carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4
Co-authored papers 3
Michel Dumontier
Institute of Data Science, Maastricht University
Co-authored papers 3
Syed Haider
Institute of Cancer Research
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Yasunori Yamamoto
Database Center for Life Science, Joint Support-Center for Data Science Research
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Robert Hoehndorf
King Abdullah University of Science and Technology
Co-authored papers 3
Jan Aerts
Co-authored papers 2
Kozo Nishida
Japan Science and Technology Agency
Co-authored papers 2
William Spooner
Eagle Genomics Ltd.
Co-authored papers 2
Pjotr Prins
Wageningen University & Research
Co-authored papers 2
Francesco Strozzi
Fondazione Parco Tecnologico Padano
Co-authored papers 2
Mizuki Morita
Okayama University
Co-authored papers 2
Peter J A Cock
James Hutton Institute
Co-authored papers 2
Chisato Yamasaki
Osaka University
Co-authored papers 2
Bruno Aranda
European Bioinformatics Institute
Co-authored papers 2
Hironori Niki
Co-authored papers 2
Issaku Yamada
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Richard Baldock
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Hidemasa Bono
Hiroshima University
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Erick Antezana
Norwegian University of Science and Technology
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