| 36749728 | Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories. | Proc Natl Acad Sci U S A | 2023 |
| 37558872 | Neuronal migration prevents spatial competition in retinal morphogenesis. | Nature | 2023 |
| 37525196 | Expanded olfactory system in ray-finned fishes capable of terrestrial exploration. | BMC Biol | 2023 |
| 37498820 | A novel nematode species from the Siberian permafrost shares adaptive mechanisms for cryptobiotic survival with C. elegans dauer larva. | PLoS Genet | 2023 |
| 37071810 | Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia. | Mol Biol Evol | 2023 |
| 37464285 | MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. | BMC Bioinformatics | 2023 |
| 35077539 | DENTIST-using long reads for closing assembly gaps at high accuracy. | Gigascience | 2022 |
| 35627151 | Contradictory Phylogenetic Signals in the Laurasiatheria Anomaly Zone. | Genes (Basel) | 2022 |
| 35361932 | Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation. | Nat Methods | 2022 |
| 36351462 | A high-quality, haplotype-phased genome reconstruction reveals unexpected haplotype diversity in a pearl oyster. | DNA Res | 2022 |
| 35042802 | Standards recommendations for the Earth BioGenome Project. | Proc Natl Acad Sci U S A | 2022 |
| 35042800 | The Earth BioGenome Project 2020: Starting the clock. | Proc Natl Acad Sci U S A | 2022 |
| 35082141 | Genome biology of the darkedged splitfin, <i>Girardinichthys multiradiatus</i>, and the evolution of sex chromosomes and placentation. | Genome Res | 2022 |
| 33031558 | Finding long tandem repeats in long noisy reads. | Bioinformatics | 2021 |
| 33911273 | Towards complete and error-free genome assemblies of all vertebrate species. | Nature | 2021 |
| 34875226 | EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization. | Cell | 2021 |
| 34146369 | Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. | Mol Ecol | 2021 |
| 32699395 | Six reference-quality genomes reveal evolution of bat adaptations. | Nature | 2020 |
| 31740823 | CLIJ: GPU-accelerated image processing for everyone. | Nat Methods | 2020 |
| 31972020 | A highly contiguous genome assembly of the bat hawkmoth Hyles vespertilio (Lepidoptera: Sphingidae). | Gigascience | 2020 |
| 33116308 | Contrasting signatures of genomic divergence during sympatric speciation. | Nature | 2020 |
| 33114810 | Practical sensorless aberration estimation for 3D microscopy with deep learning. | Opt Express | 2020 |
| 33310858 | Rapid and ongoing evolution of repetitive sequence structures in human centromeres. | Sci Adv | 2020 |
| 31406327 | Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome. | Nat Biotechnol | 2019 |
| 31743666 | Dynamic Polarization of the Multiciliated Planarian Epidermis between Body Plan Landmarks. | Dev Cell | 2019 |
| 31825309 | Rod nuclear architecture determines contrast transmission of the retina and behavioral sensitivity in mice. | Elife | 2019 |
| 31562479 | Voices in methods development. | Nat Methods | 2019 |
| 29166127 | Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species. | Annu Rev Anim Biosci | 2018 |
| 30397306 | Differential lateral and basal tension drive folding of Drosophila wing discs through two distinct mechanisms. | Nat Commun | 2018 |
| 30481296 | The genome of the tegu lizard Salvator merianae: combining Illumina, PacBio, and optical mapping data to generate a highly contiguous assembly. | Gigascience | 2018 |
| 30478326 | Content-aware image restoration: pushing the limits of fluorescence microscopy. | Nat Methods | 2018 |
| 29364872 | The axolotl genome and the evolution of key tissue formation regulators. | Nature | 2018 |
| 29364871 | The genome of Schmidtea mediterranea and the evolution of core cellular mechanisms. | Nature | 2018 |
| 29795340 | Author Correction: The axolotl genome and the evolution of key tissue formation regulators. | Nature | 2018 |
| 29652879 | Biobeam-Multiplexed wave-optical simulations of light-sheet microscopy. | PLoS Comput Biol | 2018 |
| 29335514 | Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software. | Nat Commun | 2018 |
| 28708059 | A tunable refractive index matching medium for live imaging cells, tissues and model organisms. | Elife | 2017 |
| 28383656 | PreMosa: extracting 2D surfaces from 3D microscopy mosaics. | Bioinformatics | 2017 |
| 29038308 | Cell dynamics underlying oriented growth of the <i>Drosophila</i> wing imaginal disc. | Development | 2017 |
| 26700682 | Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos. | Development | 2016 |
| 27798562 | Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms. | Nat Biotechnol | 2016 |
| 26796534 | A platform for brain-wide imaging and reconstruction of individual neurons. | Elife | 2016 |
| 26008747 | Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking. | J Cell Biol | 2015 |
| 26317470 | A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation. | Cell | 2015 |
| 26102528 | Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing. | Elife | 2015 |
| 26036213 | BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies. | Neuroinformatics | 2015 |
| 26020498 | ClearVolume: open-source live 3D visualization for light-sheet microscopy. | Nat Methods | 2015 |
| 24917506 | Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience. | Development | 2014 |
| 25201685 | The balance of prickle/spiny-legs isoforms controls the amount of coupling between core and fat PCP systems. | Curr Biol | 2014 |
| 25333104 | Active graph matching for automatic joint segmentation and annotation of C. elegans. | Med Image Comput Comput Assist Interv | 2014 |