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Author Details

Daniel Sage
Ecole Polytechnique Federale de Lausanne (EPFL)
2004
43
25
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36945686Roadmap on Deep Learning for Microscopy.ArXiv2023
35435214Steer'n'Detect: fast 2D template detection with accurate orientation estimation.Bioinformatics2022
35545712Correction of multiple-blinking artifacts in photoactivated localization microscopy.Nat Methods2022
34594030DeepImageJ: A user-friendly environment to run deep learning models in ImageJ.Nat Methods2021
31964806In pancreatic islets from type 2 diabetes patients, the dampened circadian oscillators lead to reduced insulin and glucagon exocytosis.Proc Natl Acad Sci U S A2020
30962624Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.Nat Methods2019
31097821Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.Nat Methods2019
27838880A feasability study of color flow doppler vectorization for automated blood flow monitoring.J Clin Monit Comput2017
28275001Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression.Genes Dev2017
29212004Investigating Focal Adhesion Substructures by Localization Microscopy.Biophys J2017
28057586DeconvolutionLab2: An open-source software for deconvolution microscopy.Methods2017
26685242Variational Phase Imaging Using the Transport-of-Intensity Equation.IEEE Trans Image Process2016
26656569SpotCaliper: fast wavelet-based spot detection with accurate size estimation.Bioinformatics2016
27207363Transforms and Operators for Directional Bioimage Analysis: A Survey.Adv Anat Embryol Cell Biol2016
25501816Analysis of S. pombe SIN protein association to the SPB reveals two genetically separable states of the SIN.J Cell Sci2015
26076424Quantitative evaluation of software packages for single-molecule localization microscopy.Nat Methods2015
25076144Photobleaching kinetics and time-integrated emission of fluorescent probes in cellular membranes.Molecules2014
231263233-D PSF fitting for fluorescence microscopy: implementation and localization application.J Microsc2013
23979949Circadian clock characteristics are altered in human thyroid malignant nodules.J Clin Endocrinol Metab2013
23622681A 2D/3D image analysis system to track fluorescently labeled structures in rod-shaped cells: application to measure spindle pole asymmetry during mitosis.Cell Div2013
23193167Predicting stem cell fate changes by differential cell cycle progression patterns.Development2013
23242133Autonomous and self-sustained circadian oscillators displayed in human islet cells.Diabetologia2013
21744269Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy.Biomech Model Mechanobiol2012
23148417Quantitative fluorescence loss in photobleaching for analysis of protein transport and aggregation.BMC Bioinformatics2012
22645271Bi-exponential edge-preserving smoother.IEEE Trans Image Process2012
21181715Potential of ultraviolet wide-field imaging and multiphoton microscopy for analysis of dehydroergosterol in cellular membranes.Microsc Res Tech2011
22214058Flow measurements in sewers based on image analysis: automatic flow velocity algorithm.Water Sci Technol2011
21659022Fast O1 bilateral filtering using trigonometric range kernels.IEEE Trans Image Process2011
20070610Selective visualization of fluorescent sterols in Caenorhabditis elegans by bleach-rate-based image segmentation.Traffic2010
20798830Multicolor bleach-rate imaging enlightens in vivo sterol transport.Commun Integr Biol2010
20604925A software solution for recording circadian oscillator features in time-lapse live cell microscopy.Cell Div2010
19074459Phosphorylation does not prompt, nor prevent, the formation of alpha-synuclein toxic species in a rat model of Parkinson's disease.Hum Mol Genet2009
19901459Vision-based system for the control and measurement of wastewater flow rate in sewer systems.Water Sci Technol2009
19605325Multiresolution monogenic signal analysis using the Riesz-Laplace wavelet transform.IEEE Trans Image Process2009
19478233Effect of aging on elastin functionality in human cerebral arteries.Stroke2009
19078963Circadian gene expression is resilient to large fluctuations in overall transcription rates.EMBO J2009
18096749Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast.Genome Res2008
18643256Coupled tomography and distinct-element-method approach to exploring the granular media microstructure in a jamming hourglass.Phys Rev E Stat Nonlin Soft Matter Phys2008
18003452Lung tissue classification using wavelet frames.Annu Int Conf IEEE Eng Med Biol Soc2007
16208719PixFRET, an ImageJ plug-in for FRET calculation that can accommodate variations in spectral bleed-throughs.Microsc Res Tech2005
16190472Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics.IEEE Trans Image Process2005
15254082An attenuated immune response is sufficient to enhance cognition in an Alzheimer's disease mouse model immunized with amyloid-beta derivatives.J Neurosci2004
15570586Complex wavelets for extended depth-of-field: a new method for the fusion of multichannel microscopy images.Microsc Res Tech2004
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Collaborators

Michael Unser
Ecole Polytechnique Federale de Lausanne (EPFL)
Co-authored papers 27
Thomas Pengo
Co-authored papers 3
Laur??ne Donati
EPFL Center for Imaging, Ecole Polytechnique Federale de Lausanne (EPFL)
Co-authored papers 2
Arrate Mu??oz-Barrutia
Universidad Carlos III de Madrid
Co-authored papers 2
Ioannis Xenarios
University of Lausanne
Co-authored papers 2
Susan M Gasser
L'Institut Suisse de Recherche Experimentale sur le Cancer (ISREC) Foundation
Co-authored papers 2
Damian J Matuszewski
Uppsala University
Co-authored papers 1
François Aguet
Co-authored papers 1
Laurent Gelman
Co-authored papers 1
Estibaliz G??mez-de-Mariscal
Co-authored papers 1
Carlos Garc??a-L??pez-de-Haro
Co-authored papers 1
Nico Stuurman
University of California san francisco
Co-authored papers 1
Henning M??ller
University of Applied Sciences of Western Switzerland (HES-SO Valais)
Co-authored papers 1
Arne Seitz
Co-authored papers 1
Emma Lundberg (CM4AI)
Stanford University
Co-authored papers 1
Wei Ouyang
KTH Royal Institute of Technology
Co-authored papers 1
Aydogan Ozcan
Co-authored papers 1
Virginie Uhlmann
European Bioinformatics Institute
Co-authored papers 1
Florence Hediger
University of Geneva
Co-authored papers 1
Laura Waller
University of California berkeley
Co-authored papers 1
Release 1.2