Author details

Full Name

Katherine B Louie

Affiliation

ORCID

Career Start Year

2010

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37041326	Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past.		2023
36448874	Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long-term warming.	Glob Chang Biol	2023
37890611	Establishing a versatile toolkit of flux enhanced strains and cell extracts for pathway prototyping.	Metab Eng	2023
36880270	Information theory and machine learning illuminate large-scale metabolomic responses of Brachypodium distachyon to environmental change.	Plant J	2023
37377419	A standardized quantitative analysis strategy for stable isotope probing metagenomics.	mSystems	2023
37312139	Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium.		2023
34890798	Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE.	Metab Eng	2022
35523965	SIMILE enables alignment of tandem mass spectra with statistical significance.	Nat Commun	2022
34797921	Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.	New Phytologist	2022
34862502	GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser.	Nat Methods	2022
34508657	CRAGE-CRISPR facilitates rapid activation of secondary metabolite biosynthetic gene clusters in bacteria.	Cell Chemical Biology	2022
34845335	Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism.	ISME J	2022
34399620	Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship.	mBio	2021
34017316	Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of <i>Thermoflexus hugenholtzii</i> and Three Candidate Species From China and Japan.	Front Microbiol	2021
33906945	Anaerobic gut fungi are an untapped reservoir of natural products.	Proc Natl Acad Sci U S A	2021
33881913	Metabolomic Patterns of Septoria Canker Resistant and Susceptible Genotypes 24 Hours Postinoculation.	Phytopathology	2021
33712730	A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.	Commun Biol	2021
33431904	Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea mays).	Scientific Reports	2021
30787178	Regulation of Oxygenic Photosynthesis during Trophic Transitions in the Green Alga <i>Chromochloris zofingiensis</i>.	Plant Cell	2019
31570867	Cooking shapes the structure and function of the gut microbiome.	Nat Microbiol	2019
31616394	Taxonomic and Metabolic Incongruence in the Ancient Genus <i>Streptomyces</i>.	Front Microbiol	2019
31611640	CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.	Nat Microbiol	2019
30896917	MAGI: A Method for Metabolite Annotation and Gene Integration.	ACS Chemical Biology	2019
29546662	An integrated workflow for phenazine-modifying enzyme characterization.	J Ind Microbiol Biotechnol	2018
30619134	Microbial Ecology on Solar Panels in Berkeley, CA, United States.	Frontiers in Microbiology	2018
29556109	Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly.	Nature Microbiology	2018
28520405	Morphology-Driven Control of Metabolite Selectivity Using Nanostructure-Initiator Mass Spectrometry.	Anal Chem	2017
28481340	Widespread adenine N6-methylation of active genes in fungi.	Nat Genet	2017
27782150	A robust gene-stacking method utilizing yeast assembly for plant synthetic biology.	Nature Communications	2016
27478693	New insight into the role of MMP14 in metabolic balance.	PeerJ	2016
27250540	Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.		2015
25270939	Metabolic imaging using nanostructure-initiator mass spectrometry (NIMS).	Methods in Molecular Biology	2014
23584513	Mass spectrometry imaging for in situ kinetic histochemistry.	Sci Rep	2013
24087878	OpenMSI: a high-performance web-based platform for mass spectrometry imaging.	Anal Chem	2013
24111681	"Replica-extraction-transfer" nanostructure-initiator mass spectrometry imaging of acoustically printed bacteria.	Anal Chem	2013
22407334	Acoustic deposition with NIMS as a high-throughput enzyme activity assay.	Anal Bioanal Chem	2012
22543711	Resolving brain regions using nanostructure initiator mass spectrometry imaging of phospholipids.	Integrative Biology (United Kingdom)	2012
20648680	Self-degrading, MRI-detectable hydrogel sensors with picomolar target sensitivity.	Magnetic Resonance in Medicine	2010