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Author Details

Frank Alber
University of California los angeles
1997
58
26
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36824908Conformational analysis of chromosome structures reveals vital role of chromosome morphology in gene function.bioRxiv2023
37580627Evaluating the role of the nuclear microenvironment in gene function by population-based modeling.Nat Struct Mol Biol2023
36824908Conformational analysis of chromosome structures reveals vital role of chromosome morphology in gene function.bioRxiv2023
37503219Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.bioRxiv2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37580627Evaluating the role of the nuclear microenvironment in gene function by population-based modeling.Nat Struct Mol Biol2023
37503219Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.bioRxiv2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
34400556Uncovering the Principles of Genome Folding by 3D Chromatin Modeling.Cold Spring Harb Perspect Biol2022
36175411Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer.Nat Commun2022
35817938Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations.Nat Methods2022
34400556Uncovering the Principles of Genome Folding by 3D Chromatin Modeling.Cold Spring Harb Perspect Biol2022
34963059Integrative approaches in genome structure analysis.Structure2022
35817938Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations.Nat Methods2022
36175411Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer.Nat Commun2022
34963059Integrative approaches in genome structure analysis.Structure2022
33753204Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography.J Struct Biol2021
33753204Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography.J Struct Biol2021
33298443Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.Sci Adv2020
33298443Visualizing subcellular rearrangements in intact β cells using soft x-ray tomography.Sci Adv2020
30697540Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation.Front Cardiovasc Med2019
30697540Spatial Principles of Chromatin Architecture Associated With Organ-Specific Gene Regulation.Front Cardiovasc Med2019
30744995De Novo Structural Pattern Mining in Cellular Electron Cryotomograms.Structure2019
30744995De Novo Structural Pattern Mining in Cellular Electron Cryotomograms.Structure2019
29622804Producing genome structure populations with the dynamic and automated PGS software.Nat Protoc2018
29897492CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.Nucleic Acids Res2018
29570991Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.Cell2018
29622804Producing genome structure populations with the dynamic and automated PGS software.Nat Protoc2018
29523239Quantitative Methods to Investigate the 4D Dynamics of Heterochromatic Repair Sites in Drosophila Cells.Methods Enzymol2018
29771637Quantitative imaging of chromatin decompaction in living cells.Mol Biol Cell2018
29897492CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.Nucleic Acids Res2018
29523239Quantitative Methods to Investigate the 4D Dynamics of Heterochromatic Repair Sites in Drosophila Cells.Methods Enzymol2018
29771637Quantitative imaging of chromatin decompaction in living cells.Mol Biol Cell2018
29570991Opportunities and Challenges in Building a Spatiotemporal Multi-scale Model of the Human Pancreatic β Cell.Cell2018
28760140The three-dimensional genome organization of Drosophila melanogaster through data integration.Genome Biol2017
28735107Integrative modelling of cellular assemblies.Curr Opin Struct Biol2017
28552576TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis.Structure2017
28760140The three-dimensional genome organization of Drosophila melanogaster through data integration.Genome Biol2017
28335812CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA.Genome Biol2017
28167501Comprehensive characterization of neutrophil genome topology.Genes Dev2017
28167501Comprehensive characterization of neutrophil genome topology.Genes Dev2017
28335812CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA.Genome Biol2017
28552576TomoMiner and TomoMinerCloud: A Software Platform for Large-Scale Subtomogram Structural Analysis.Structure2017
28735107Integrative modelling of cellular assemblies.Curr Opin Struct Biol2017
26811423Global reorganization of budding yeast chromosome conformation in different physiological conditions.J Cell Biol2016
26811423Global reorganization of budding yeast chromosome conformation in different physiological conditions.J Cell Biol2016
27240697Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities.Nat Commun2016
26951677Population-based 3D genome structure analysis reveals driving forces in spatial genome organization.Proc Natl Acad Sci U S A2016
26704975TopDom: an efficient and deterministic method for identifying topological domains in genomes.Nucleic Acids Res2016
27716029Simulating cryo electron tomograms of crowded cell cytoplasm for assessment of automated particle picking.BMC Bioinformatics2016
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Collaborators

Xianghong Jasmine Zhou
David Geffen School of Medicine, University of California at Los Angeles
Co-authored papers 13
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 10
Maya Topf
Leibniz-Institut fur Virologie (LIV)
Co-authored papers 7
Wenyuan Li
Harvard Medical School
Co-authored papers 7
Yonggang Zhou
David Geffen School of Medicine, University of California at Los Angeles
Co-authored papers 5
Michael P Rout
The Rockefeller University
Co-authored papers 4
Damien P Devos
Universidad Pablo de Olavide
Co-authored papers 4
Jitin Singla
Indian Institute of Technology Roorkee
Co-authored papers 4
Rosemary Williams
The Rockefeller University
Co-authored papers 4
Brian T Chait
The Rockefeller University
Co-authored papers 4
Svetlana Dokudovskaya
CNRS UMR9018, Institut Gustave Roussy, Universite Paris-Saclay
Co-authored papers 4
Raymond C Stevens
iHuman Institute, ShanghaiTech University
Co-authored papers 4
Kate L White
Lawrence Berkeley National Laboratory
Co-authored papers 3
Dmitry Korkin
Worcester Polytechnic Institute
Co-authored papers 3
Martin Beck
Max Planck Institute of Biophysics
Co-authored papers 3
Hamid R Kalhor
Sharif University of Technology
Co-authored papers 3
Wenzhu Zhang
Dalian University of Technology
Co-authored papers 2
Osnat Karni
Columbia University
Co-authored papers 2
Liesbeth M Veenhoff
European Institute for the Biology of Ageing, University of Groningen
Co-authored papers 2
Fred P Davis
Howard Hughes Medical Institute
Co-authored papers 2
Wing Hung Wong
Stanford University
Co-authored papers 2
Carolyn A Larabell
University of California San Francisco
Co-authored papers 2
Julia Kipper
Rockefeller University
Co-authored papers 2
Adisetyantari Suprapto
Co-authored papers 2
Arun Prasad Pandurangan
Co-authored papers 2
Steven M Dubinett
David Geffen School of Medicine at university of california los angeles
Co-authored papers 2
Thomas M Vondriska
Co-authored papers 1
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Release 1.2