Author details

Full Name

Gydo C P van Zundert

Affiliation

Utrecht University

ORCID

Career Start Year

2011

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36064945	Structural basis for recognition of N-formyl peptides as pathogen-associated molecular patterns.	Nat Commun	2022
36064945	Structural basis for recognition of N-formyl peptides as pathogen-associated molecular patterns.	Nat Commun	2022
33210433	qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps.	Protein Sci	2021
33823127	Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality.	Structure	2021
33210433	qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps.	Protein Sci	2021
34583994	Structural basis for isoform-specific inhibition of human CTPS1.	Proc Natl Acad Sci U S A	2021
33823127	Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality.	Structure	2021
34583994	Structural basis for isoform-specific inhibition of human CTPS1.	Proc Natl Acad Sci U S A	2021
32413291	GemSpot: A Pipeline for Robust Modeling of Ligands into Cryo-EM Maps.	Structure	2020
32413291	GemSpot: A Pipeline for Robust Modeling of Ligands into Cryo-EM Maps.	Structure	2020
32006284	Protein-Protein Modeling Using Cryo-EM Restraints.	Methods Mol Biol	2020
32968273	Synthetic group A streptogramin antibiotics that overcome Vat resistance.	Nature	2020
32006284	Protein-Protein Modeling Using Cryo-EM Restraints.	Methods Mol Biol	2020
32968273	Synthetic group A streptogramin antibiotics that overcome Vat resistance.	Nature	2020
30457858	qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps.	J Med Chem	2018
30457858	qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps.	J Med Chem	2018
27802573	Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.	Proteins	2017
28730688	Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).	Proteins	2017
27939290	The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes.	J Mol Biol	2017
27802573	Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.	Proteins	2017
28730688	Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI (page 418).	Proteins	2017
27939290	The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes.	J Mol Biol	2017
27318041	Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids.	J Struct Biol	2016
27318041	Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids.	J Struct Biol	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
26410586	The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.	J Mol Biol	2016
27819269	Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.	Nat Commun	2016
26410586	The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.	J Mol Biol	2016
27819269	Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF.	Nat Commun	2016
27122118	Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.	Proteins	2016
26026169	DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.	Bioinformatics	2015
25914056	Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data.	Structure	2015
25984698	Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR.	Nat Methods	2015
26026169	DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.	Bioinformatics	2015
25914056	Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data.	Structure	2015
25984698	Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR.	Nat Methods	2015
24573481	Modeling protein-protein complexes using the HADDOCK webserver "modeling protein complexes with HADDOCK".	Methods Mol Biol	2014
24573481	Modeling protein-protein complexes using the HADDOCK webserver "modeling protein complexes with HADDOCK".	Methods Mol Biol	2014
23913867	Defining the limits of homology modeling in information-driven protein docking.	Proteins	2013
23913867	Defining the limits of homology modeling in information-driven protein docking.	Proteins	2013
21618380	IR spectroscopy of isolated neutral and protonated adenine and 9-methyladenine.	Chemphyschem	2011
21618380	IR spectroscopy of isolated neutral and protonated adenine and 9-methyladenine.	Chemphyschem	2011

1 - 42 of 42

Daniel J Saltzberg

University of California san francisco

Career Start Year 2014

Number of shared co-authors 6

Mihaly Varadi

European Bioinformatics Institute

Career Start Year 2014

Number of shared co-authors 4

Ignacia Echeverria

University of California san francisco

Career Start Year 2010

Number of shared co-authors 4

Juergen Haas

University of Basel

Career Start Year 2007

Number of shared co-authors 4

Massimiliano Bonomi

Institut Pasteur, Universite Paris Cite, CNRS UMR 8

Career Start Year 2007

Number of shared co-authors 5

Barak Raveh

The Hebrew University of Jerusalem

Career Start Year 2007

Number of shared co-authors 6

Guillaume Launay

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Career Start Year 2007

Number of shared co-authors 3

Jacob D Durrant

University of Pittsburgh

Career Start Year 2006

Number of shared co-authors 0

Jaume Bonet

Institute of Bioengineering, Ecole Polytechnique Federale de Lausanne

Career Start Year 2006

Number of shared co-authors 7

Frank DiMaio

University of Washington

Career Start Year 2006

Number of shared co-authors 18

Gunnar F Schr??der

Institute of Biological Information Processing (Structural Biochemistry)

Career Start Year 2003

Number of shared co-authors 10

Yang Zhang

University of Michigan ann arbor

Career Start Year 2002

Number of shared co-authors 12

Hao Fan

College of Biotechnology and Bioengineering, Zhejiang University of Technology

Career Start Year 2001

Number of shared co-authors 3

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 3

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 7

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 7

Manuel Rueda

The Barcelona Institute of Science and Technology

Career Start Year 2001

Number of shared co-authors 2

Liam J McGuffin

University of Reading

Career Start Year 2000

Number of shared co-authors 10

Torsten Schwede

University of Basel

Career Start Year 1999

Number of shared co-authors 20

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 4

Heather A Carlson

University of Michigan ann arbor

Career Start Year 1999

Number of shared co-authors 0

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 5

Haim J Wolfson

Tel Aviv University

Career Start Year 1991

Number of shared co-authors 36

Gerard J Kleywegt

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 1990

Number of shared co-authors 6

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 22

Roland L Dunbrack

Fox Chase Cancer Center

Career Start Year 1989

Number of shared co-authors 24

Wladek Minor

University of Virginia

Career Start Year 1989

Number of shared co-authors 7

David Baker

University of Washington

Career Start Year 1988

Number of shared co-authors 48

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 3

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 9

row(s) 1 - 30 of 30

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Co-authored papers 13

Adrien S J Melquiond

Oncode Institute & Hubrecht Institute-KNAW and University Medical Center Utrecht

Co-authored papers 6

Mikael Trellet

Co-authored papers 6

Panagiotis L Kastritis

Interdisciplinary Research Center HALOmem, Martin Luther University Halle-Wittenberg

Co-authored papers 5

Jo??o P G L M Rodrigues

Stanford University

Co-authored papers 5

Ezgi Karaca

Dokuz Eylul University

Co-authored papers 5

Marc van Dijk

Co-authored papers 4

Li C Xue

Utrecht University

Co-authored papers 3

James S Fraser

University of California san francisco

Co-authored papers 3

Koen Visscher

Inscopix Inc.

Co-authored papers 3

Mehdi Nellen

Utrecht University

Co-authored papers 3

Anna Vangone

Roche Pharma Research and Early Development

Co-authored papers 3

Georgios Skiniotis

Stanford University School of Medicine

Co-authored papers 2

Christophe Schmitz

Co-authored papers 2

Michael J Robertson

Stanford University School of Medicine

Co-authored papers 2

Henry van den Bedem

University of California San Francisco

Co-authored papers 2

Cunliang Geng

Co-authored papers 2

Zhiping Weng

University of Massachusetts Medical School

Co-authored papers 1

Anisah W Ghoorah

University of Mauritius

Co-authored papers 1

Neil J Bruce

Heidelberg Institute for Theoretical Studies (HITS)

Co-authored papers 1

Zhiwei Ma

Dalton Cardiovascular Research Center, University of Missouri

Co-authored papers 1

Dmitri Beglov

Boston University

Co-authored papers 1

Justin T Biel

University of California san francisco

Co-authored papers 1

Liming Qiu

Perelman School of Medicine, University of Pennsylvania

Co-authored papers 1

Artem B Mamonov

MGH/Harvard Medical School

Co-authored papers 1

Brian Jim??nez-Garc??a

Utrecht University

Co-authored papers 1

Iain H Moal

GSK Medicines Research Centre

Co-authored papers 1

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Co-authored papers 1

Jooyoung Lee

Korea Institute for Advanced Study

Co-authored papers 1

Bernard Maigret

Universite de Lorraine, CNRS

Co-authored papers 1

1 - 30

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