|
| 37703053 | Conserving a threatened North American walnut: a chromosome-scale reference genome for butternut (Juglans cinerea). | G3 (Bethesda) | 2024 |
| 36210755 | Contrasting transcriptomic patterns reveal a genomic basis for drought resilience in the relict fir Abies pinsapo Boiss. | Tree Physiol | 2023 |
| 38014212 | A Genome Sequence for the Threatened Whitebark Pine. | bioRxiv | 2023 |
| 37601314 | Welcome to the big leaves: Best practices for improving genome annotation in non-model plant genomes. | Appl Plant Sci | 2023 |
| 36541367 | Multispecies comparison of host responses to Fusarium circinatum challenge in tropical pines show consistency in resistance mechanisms. | Plant Cell Environ | 2023 |
| 36454025 | A long-read and short-read transcriptomics approach provides the first high-quality reference transcriptome and genome annotation for Pseudotsuga menziesii (Douglas-fir). | G3 (Bethesda) | 2023 |
| 34383377 | A genome-wide SNP genotyping resource for tropical pine tree species. | Mol Ecol Resour | 2022 |
| 37632754 | Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids. | Gigascience | 2022 |
| 35437001 | The Cycas genome and the early evolution of seed plants. | Nat Plants | 2022 |
| 35523985 | Bioinformatic approach for the discovery of cis-eQTL signals during fruit ripening of a woody species as grape (Vitis vinifera L.). | Sci Rep | 2022 |
| 36225821 | Changes in demography and geographic distribution in the weeping pinyon pine (<i>Pinus pinceana</i>) during the Pleistocene. | Ecol Evol | 2022 |
| 35222971 | Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera. | Ecol Evol | 2022 |
| 35100403 | Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin. | G3 (Bethesda) | 2022 |
| 35042803 | Green plant genomes: What we know in an era of rapidly expanding opportunities. | Proc Natl Acad Sci U S A | 2022 |
| 35042802 | Standards recommendations for the Earth BioGenome Project. | Proc Natl Acad Sci U S A | 2022 |
| 34967059 | Strategies of tolerance reflected in two North American maple genomes. | Plant J | 2022 |
| 35337270 | De novo assembly of a fruit transcriptome set identifies AmMYB10 as a key regulator of anthocyanin biosynthesis in Aronia melanocarpa. | BMC Plant Biol | 2022 |
| 34897455 | NLR diversity and candidate fusiform rust resistance genes in loblolly pine. | G3 (Bethesda) | 2022 |
| 32956800 | High gene space divergence contrasts with frozen vegetative architecture in the moss family Funariaceae. | Mol Phylogenet Evol | 2021 |
| 34251419 | Tripal, a community update after 10Â years of supporting open source, standards-based genetic, genomic and breeding databases. | Brief Bioinform | 2021 |
| 34268018 | Toward genomic selection in <i>Pinus taeda</i>: Integrating resources to support array design in a complex conifer genome. | Appl Plant Sci | 2021 |
| 34140968 | Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes. | Front Genet | 2021 |
| 31628884 | EnTAP: Bringing faster and smarter functional annotation to non-model eukaryotic transcriptomes. | Mol Ecol Resour | 2020 |
| 31823432 | Comparative genomics of six Juglans species reveals disease-associated gene family contractions. | Plant J | 2020 |
| 31819237 | Co-option of wing-patterning genes underlies the evolution of the treehopper helmet. | Nat Ecol Evol | 2020 |
| 32621602 | Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. | Database (Oxford) | 2020 |
| 32948606 | A Reference Genome Sequence for Giant Sequoia. | G3 (Bethesda) | 2020 |
| 30357347 | 15 years of GDR: New data and functionality in the Genome Database for Rosaceae. | Nucleic Acids Res | 2019 |
| 31892954 | Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. | Evol Appl | 2019 |
| 31688940 | Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. | Database (Oxford) | 2019 |
| 31328773 | Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. | Database (Oxford) | 2019 |
| 31437583 | gFACs: Gene Filtering, Analysis, and Conversion to Unify Genome Annotations Across Alignment and Gene Prediction Frameworks. | Genomics Proteomics Bioinformatics | 2019 |
| 31293610 | Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. | Front Plant Sci | 2019 |
| 31487786 | Dual RNA-Seq Analysis of the Pine-<i>Fusarium circinatum</i> Interaction in Resistant (<i>Pinus tecunumanii</i>) and Susceptible (<i>Pinus patula</i>) Hosts. | Microorganisms | 2019 |
| 30865259 | Growing and cultivating the forest genomics database, TreeGenes. | Database (Oxford) | 2019 |
| 29559535 | Comparative Transcriptomics Among Four White Pine Species. | G3 (Bethesda) | 2018 |
| 30239679 | AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. | Database (Oxford) | 2018 |
| 30239664 | Growing and cultivating the forest genomics database, TreeGenes. | Database (Oxford) | 2018 |
| 30139335 | Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation). | BMC Genomics | 2018 |
| 29510661 | JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process. | BMC Genomics | 2018 |
| 28012221 | Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife. | Mol Ecol | 2017 |
| 28316116 | Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA. | Mol Ecol | 2017 |
| 28419256 | ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications. | DNA Res | 2017 |
| 28369353 | An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. | Gigascience | 2017 |
| 29220446 | New extension software modules to enhance searching and display of transcriptome data in Tripal databases. | Database (Oxford) | 2017 |
| 29020755 | Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. | Gigascience | 2017 |
| 28751502 | The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. | G3 (Bethesda) | 2017 |
| 28738815 | Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles. | BMC Genomics | 2017 |
| 28603533 | Transcriptome Analysis Reveals Differential Gene Expression and a Possible Role of Gibberellins in a Shade-Tolerant Mutant of Perennial Ryegrass. | Front Plant Sci | 2017 |
| 27145194 | The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of non-structural polyphenols. | Plant J | 2016 |