Author details

Full Name

Robert Stevens

Affiliation

The University of Manchester

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

Mohammad Sadnan Al Manir (CM4AI)

PMID	Paper Title	Journal Title	Published Year
34804501	Perspectives on automated composition of workflows in the life sciences.	F1000Res	2021
32759099	Semantic Deep Learning: Prior Knowledge and a Type of Four-Term Embedding Analogy to Acquire Treatments for Well-Known Diseases.	JMIR Med Inform	2020
31711540	Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes.	J Biomed Semantics	2019
29347969	MIRO: guidelines for minimum information for the reporting of an ontology.	J Biomed Semantics	2018
28254676	Unveiling antimicrobial peptide-generating human proteases using PROTEASIX.	J Proteomics	2018
29650041	Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature.	J Biomed Semantics	2018
28423846	A Case Study on Sepsis Using PubMed and Deep Learning for Ontology Learning.	Stud Health Technol Inform	2017
28315253	Prediction of Proteases Involved in Peptide Generation.	Methods Mol Biol	2017
26867217	Ten Simple Rules for Selecting a Bio-ontology.	PLoS Comput Biol	2016
27751176	Supporting the analysis of ontology evolution processes through the combination of static and dynamic scaling functions in OQuaRE.	J Biomed Semantics	2016
27331905	A Survey of Bioinformatics Database and Software Usage through Mining the Literature.	PLoS One	2016
27259807	The Proteasix Ontology.	J Biomed Semantics	2016
27246819	The BioHub Knowledge Base: Ontology and Repository for Sustainable Biosourcing.	J Biomed Semantics	2016
27274817	Omics databases on kidney disease: where they can be found and how to benefit from them.	Clin Kidney J	2016
26939790	Bias in the reporting of sex and age in biomedical research on mouse models.	Elife	2016
24993110	Prioritising lexical patterns to increase axiomatisation in biomedical ontologies. The role of localisation and modularity.	Methods Inf Med	2015
26131352	Ambiguity and variability of database and software names in bioinformatics.	J Biomed Semantics	2015
25989337	Quality of methods reporting in animal models of colitis.	Inflamm Bowel Dis	2015
25488031	Approaching the axiomatic enrichment of the Gene Ontology from a lexical perspective.	Artif Intell Med	2015
24602198	Thematic series on biomedical ontologies in JBMS: challenges and new directions.	J Biomed Semantics	2014
25937879	Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference.	J Biomed Semantics	2014
25068035	The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.	J Biomed Semantics	2014
25076044	The quality of methods reporting in parasitology experiments.	PLoS One	2014
25161253	Extracting patterns of database and software usage from the bioinformatics literature.	Bioinformatics	2014
22554701	Measuring the level of activity in community built bio-ontologies.	J Biomed Inform	2013
23883183	The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.	BMC Bioinformatics	2013
23768135	bioNerDS: exploring bioinformatics' database and software use through literature mining.	BMC Bioinformatics	2013
23348921	Proteasix: a tool for automated and large-scale prediction of proteases involved in naturally occurring peptide generation.	Proteomics	2013
22687389	Workshop on laboratory protocol standards for the Molecular Methods Database.	N Biotechnol	2013
22373396	Populous: a tool for building OWL ontologies from templates.	BMC Bioinformatics	2012
23236474	Evaluation of the Zucker diabetic fatty (ZDF) rat as a model for human disease based on urinary peptidomic profiles.	PLoS One	2012
23244503	Analysing Syntactic Regularities and Irregularities in SNOMED-CT.	J Biomed Semantics	2012
22480202	Structure-based classification and ontology in chemistry.	J Cheminform	2012
22541594	Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL.	J Biomed Semantics	2012
22676436	The language of gene ontology: a Zipf's law analysis.	BMC Bioinformatics	2012
22345404	The KUPKB: a novel Web application to access multiomics data on kidney disease.	FASEB J	2012
21388573	Mining semantic networks of bioinformatics e-resources from the literature.	J Biomed Semantics	2011
22255145	Using semantic web technologies to manage complexity and change in biomedical data.	Annu Int Conf IEEE Eng Med Biol Soc	2011
21624162	Developing a kidney and urinary pathway knowledge base.	J Biomed Semantics	2011
21624160	Automating generation of textual class definitions from OWL to English.	J Biomed Semantics	2011
20484378	BioCatalogue: a universal catalogue of web services for the life sciences.	Nucleic Acids Res	2010
20838431	Adding a little reality to building ontologies for biology.	PLoS One	2010
21029416	Further developments towards a genome-scale metabolic model of yeast.	BMC Syst Biol	2010
19480664	The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process.	Genome Biol	2009
19763936	A systematic strategy for the discovery of candidate genes responsible for phenotypic variation.	Methods Mol Biol	2009
19796398	A user-centred evaluation framework for the Sealife semantic web browsers.	BMC Bioinformatics	2009
19796395	BioGateway: a semantic systems biology tool for the life sciences.	BMC Bioinformatics	2009
19426458	Issues in learning an ontology from text.	BMC Bioinformatics	2009
18358788	State of the nation in data integration for bioinformatics.	J Biomed Inform	2008
18761740	Methodology capture: discriminating between the "best" and the rest of community practice.	BMC Bioinformatics	2008

1 - 50 of 94

Jerven Bolleman

carnegie mellon university - 1 rue Michel Servet CH-1 Geneva 4

Career Start Year 2013

Number of shared co-authors 15

Tudor Groza

Perth Children's Hospital

Career Start Year 2012

Number of shared co-authors 15

Jie Zheng

University of Pennsylvania Perelman School of Medicine

Career Start Year 2010

Number of shared co-authors 26

Aravind Venkatesan

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2010

Number of shared co-authors 4

Alejandra Gonzalez-Beltran

Oxford e-Research Centre, University of Oxford

Career Start Year 2009

Number of shared co-authors 40

Seth Carbon

Lawrence Berkeley National Laboratory

Career Start Year 2009

Number of shared co-authors 8

Sarala M Wimalaratne

European Bioinformatics Institute (EMBL-EBI)

Career Start Year 2009

Number of shared co-authors 22

Ernesto Jim??nez-Ruiz

City University of London

Career Start Year 2008

Number of shared co-authors 5

Mathias Brochhausen

College of Medicine, University of Arkansas for Medical Sciences

Career Start Year 2006

Number of shared co-authors 21

Leyla Garcia

European Bioinformatics Institute

Career Start Year 2005

Number of shared co-authors 10

Karin Verspoor

National Centre for Infections in Cancer, 5Peter MacCallum Cancer Centre

Career Start Year 2005

Number of shared co-authors 4

David Osumi-Sutherland

European Bioinformatics Institute

Career Start Year 2004

Number of shared co-authors 14

Jane Lomax

Wellcome Sanger Institute

Career Start Year 2003

Number of shared co-authors 16

Alan Ruttenberg

University at Buffalo

Career Start Year 2003

Number of shared co-authors 31

Benjamin M Good

Lawrence Berkeley National Laboratory

Career Start Year 2003

Number of shared co-authors 6

Rebecca E Foulger

Queen Mary University of London

Career Start Year 2003

Number of shared co-authors 12

M??lanie Courtot

Ontario Institute for Cancer Research

Career Start Year 2001

Number of shared co-authors 38

Michael Bada

Center for Health AI, University of Colorado Anschutz Medical Campus

Career Start Year 2000

Number of shared co-authors 6

Georgios V Gkoutos

Institute of Cancer and Genomic Sciences, University of Birmingham

Career Start Year 2000

Number of shared co-authors 9

Karen Eilbeck

University of Utah

Career Start Year 1999

Number of shared co-authors 16

Cecilia N Arighi

University of Delaware

Career Start Year 1998

Number of shared co-authors 6

Midori A Harris

University of Cambridge

Career Start Year 1998

Number of shared co-authors 13

Andra Waagmeester

Maastricht University

Career Start Year 1998

Number of shared co-authors 12

Michel Dumontier

Institute of Data Science, Maastricht University

Career Start Year 1998

Number of shared co-authors 51

Fabien Campagne

Weill Cornell Medical College

Career Start Year 1998

Number of shared co-authors 1

Yasunori Yamamoto

Database Center for Life Science, Joint Support-Center for Data Science Research

Career Start Year 1997

Number of shared co-authors 12

Nick Juty

University of Manchester

Career Start Year 1997

Number of shared co-authors 36

Mark D Wilkinson

Universidad Politecnica de Madrid (UPM)

Career Start Year 1993

Number of shared co-authors 21

Lawrence E Hunter

University of Colorado School of Medicine

Career Start Year 1993

Number of shared co-authors 3

Kei-Hoi Cheung

Yale University School of Medicine

Career Start Year 1992

Number of shared co-authors 4

row(s) 1 - 30 of 30

Carole Goble

University of Manchester

Co-authored papers 22

Andy Brass

Co-authored papers 21

Phillip Lord

Newcastle University

Co-authored papers 14

Katherine Wolstencroft

Leiden Institute of Advanced Computer Science, Leiden University

Co-authored papers 10

Goran Nenadic

Co-authored papers 10

Simon Jupp

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 9

Susanna-Assunta Sansone

Oxford e-Research Centre, University of Oxford

Co-authored papers 5

James Malone

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 5

Helen Parkinson

European Bioinformatics Institute

Co-authored papers 5

Norman W Paton

Co-authored papers 4

Chris F Taylor

European Molecular Biology Laboratory- European Bioinformatics Institute

Co-authored papers 4

Mikel Ega??a Aranguren

University of Basque Country (UPV/EHU)

Co-authored papers 4

Norman Morrison

European Bioinformatics Institute

Co-authored papers 4

Philippe Rocca-Serra

University of Oxford

Co-authored papers 4

Erick Antezana

Norwegian University of Science and Technology

Co-authored papers 3

Jesualdo Tom??s Fern??ndez-Breis

Universidad de Murcia

Co-authored papers 3

Patricia L Whetzel

University of Colorado Anschutz Medical Campus

Co-authored papers 3

Martin Kuiper

Norwegian University of Science and Technology

Co-authored papers 3

Dawn Field

Biodiversity Institute, University of Oxford

Co-authored papers 3

Tanya Gray

Co-authored papers 3

Alan Rector

University of Manchester

Co-authored papers 2

Gilberto Fragoso

NCI Center for Bioinformatics, National Cancer Institute

Co-authored papers 2

Ryan R Brinkman

University of British Columbia

Co-authored papers 2

Stephen G Oliver

University of Cambridge

Co-authored papers 2

Olivier Bodenreider

National Institutes of Health

Co-authored papers 2

Michael Ashburner

University of Cambridge

Co-authored papers 2

Robert Hoehndorf

King Abdullah University of Science and Technology

Co-authored papers 2

Matthew Pocock

Newcastle University

Co-authored papers 2

David Hancock

Co-authored papers 2

Mat???? Kala??

University of Bergen

Co-authored papers 2

1 - 30

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