Author details

Full Name

Paul M Thomas

Affiliation

Northwestern University

ORCID

Career Start Year

2003

Papers

107

H Index

Expertise

CM4AI Collaborator

Emma Lundberg (CM4AI)

PMID	Paper Title	Journal Title	Published Year
34986596	The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms.	Nucleic Acids Res	2022
35446460	Proteoform-Selective Imaging of Tissues Using Mass Spectrometry.	Angew Chem Int Ed Engl	2022
36475650	Middle-Down Mass Spectrometry Reveals Activity-Modifying Phosphorylation Barcode in a Class C G Protein-Coupled Receptor.	J Am Chem Soc	2022
35320042	A mixed-valent Fe(II)Fe(III) species converts cysteine to an oxazolone/thioamide pair in methanobactin biosynthesis.	Proc Natl Acad Sci U S A	2022
35290070	Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms.	J Proteome Res	2022
35286768	ProSight Annotator: Complete control and customization of protein entries in UniProt XML files.	Proteomics	2022
34878788	Next-Generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire.	J Proteome Res	2022
35084980	The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells.	Science	2022
33426883	<i>In vitro</i>-Constructed Ribosomes Enable Multi-site Incorporation of Noncanonical Amino Acids into Proteins.	Biochemistry	2021
33844503	Deeper Protein Identification Using Field Asymmetric Ion Mobility Spectrometry in Top-Down Proteomics.	Anal Chem	2021
34510894	Characterization of a Copper-Chelating Natural Product from the Methanotroph <i>Methylosinus</i> sp. LW3.	Biochemistry	2021
34268518	Next-generation Serology by Mass Spectrometry: Readout of the SARS-CoV-2 Antibody Repertoire.	medRxiv	2021
31123999	Biotin Identification Proteomics in Three-Dimensional Organotypic Human Skin Cultures.	Methods Mol Biol	2020
31888965	Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics.	Mol Cell Proteomics	2020
32103017	NMT1 and NMT2 are lysine myristoyltransferases regulating the ARF6 GTPase cycle.	Nat Commun	2020
31910830	Identification of Plasmodium falciparum proteoforms from liver stage models.	Malar J	2020
33079696	Development of novel methods for non-canonical myeloma protein analysis with an innovative adaptation of immunofixation electrophoresis, native top-down mass spectrometry, and middle-down <i>de novo</i> sequencing.	Clin Chem Lab Med	2020
33104722	Targeted detection and quantitation of histone modifications from 1,000 cells.	PLoS One	2020
33239043	Histone tail analysis reveals H3K36me2 and H4K16ac as epigenetic signatures of diffuse intrinsic pontine glioma.	J Exp Clin Cancer Res	2020
32879425	Chemical composition of material extractives influences microbial growth and dynamics on wetted wood materials.	Sci Rep	2020
32843555	Heterologous Expression of the Unusual Terreazepine Biosynthetic Gene Cluster Reveals a Promising Approach for Identifying New Chemical Scaffolds.	mBio	2020
30587525	Identification and targeting of novel CDK9 complexes in acute myeloid leukemia.	Blood	2019
31706984	A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli.	Cell Chem Biol	2019
30224337	USP7 Cooperates with NOTCH1 to Drive the Oncogenic Transcriptional Program in T-Cell Leukemia.	Clin Cancer Res	2019
31209220	Native top-down mass spectrometry provides insights into the copper centers of membrane-bound methane monooxygenase.	Nat Commun	2019
31550894	Multidimensional Top-Down Proteomics of Brain-Region-Specific Mouse Brain Proteoforms Responsive to Cocaine and Estradiol.	J Proteome Res	2019
31286445	Coupling Fluorescence-Activated Cell Sorting and Targeted Analysis of Histone Modification Profiles in Primary Human Leukocytes.	J Am Soc Mass Spectrom	2019
31451767	A five-level classification system for proteoform identifications.	Nat Methods	2019
31050378	Identification and Quantification of Proteoforms by Mass Spectrometry.	Proteomics	2019
30992445	Microbial and metabolic succession on common building materials under high humidity conditions.	Nat Commun	2019
30647073	Accurate Estimation of Context-Dependent False Discovery Rates in Top-Down Proteomics.	Mol Cell Proteomics	2019
29481055	Top-Down Proteomics Enables Comparative Analysis of Brain Proteoforms Between Mouse Strains.	Anal Chem	2018
30192817	Stability of histone post-translational modifications in samples derived from liver tissue and primary hepatic cells.	PLoS One	2018
29924586	The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins.	Anal Chem	2018
30323281	Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria.	Nat Commun	2018
30381408	The vermiform appendix impacts the risk of developing Parkinson's disease.	Sci Transl Med	2018
29443976	How many human proteoforms are there?	Nat Chem Biol	2018
29745816	The unique biomineralization transcriptome and proteome of Lytechinus variegatus teeth.	Connect Tissue Res	2018
29631395	Identification of the First Diketomorpholine Biosynthetic Pathway Using FAC-MS Technology.	ACS Chem Biol	2018
29572528	Cell-free protein synthesis from genomically recoded bacteria enables multisite incorporation of noncanonical amino acids.	Nat Commun	2018
29567715	The biosynthesis of methanobactin.	Science	2018
29533658	Interrogation of Benzomalvin Biosynthesis Using Fungal Artificial Chromosomes with Metabolomic Scoring (FAC-MS): Discovery of a Benzodiazepine Synthase Activity.	Biochemistry	2018
27815408	EphA2 proteomics in human keratinocytes reveals a novel association with afadin and epidermal tight junctions.	J Cell Sci	2017
28412815	High-Throughput Analysis of Intact Human Proteins Using UVPD and HCD on an Orbitrap Mass Spectrometer.	J Proteome Res	2017
28111950	Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein.	J Proteome Res	2017
28107647	Programmed Ribosomal Frameshifting Generates a Copper Transporter and a Copper Chaperone from the Same Gene.	Mol Cell	2017
28150248	Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite.	Methods Mol Biol	2017
28510335	Proteoforms in Peripheral Blood Mononuclear Cells as Novel Rejection Biomarkers in Liver Transplant Recipients.	Am J Transplant	2017
28924605	PAI-1 is a critical regulator of FGF23 homeostasis.	Sci Adv	2017
28895528	A synthetic biology approach to probing nucleosome symmetry.	Elife	2017

1 - 50 of 107

Richard A Scheltema

Utrecht Institute for Pharmaceutical Sciences, Utrecht University

Career Start Year 2008

Number of shared co-authors 7

Michael R Hoopmann

Institute for Systems Biology

Career Start Year 2007

Number of shared co-authors 11

Paolo Nanni

Functional Genomics Center Zurich (FGCZ)-University of Zurich/ETH Zurich

Career Start Year 2007

Number of shared co-authors 1

Athena A Schepmoes

Pacific Northwest National Laboratory

Career Start Year 2006

Number of shared co-authors 7

Therese R W Clauss

Pacific Northwest National Laboratory

Career Start Year 2005

Number of shared co-authors 9

Patrick G A Pedrioli

Institute of Translational Medicine, Swiss Federal Institute of Technology/ETH Zurich

Career Start Year 2004

Number of shared co-authors 5

Matthew E Monroe

Pacific Northwest National Laboratory

Career Start Year 2004

Number of shared co-authors 12

Charles Ansong

Pacific Northwest National Laboratory

Career Start Year 2004

Number of shared co-authors 5

Ludovic Gillet

ETH Zurich

Career Start Year 2002

Number of shared co-authors 4

Samuel O Purvine

Pacific Northwest National Laboratory

Career Start Year 2001

Number of shared co-authors 12

Hanno Steen

Boston Children's Hospital, USA Harvard Medical School, Harvard Medical School

Career Start Year 2000

Number of shared co-authors 6

Marina A Gritsenko

Pacific Northwest National Laboratory

Career Start Year 2000

Number of shared co-authors 10

Brian L Frey

University of Wisconsin-Madison, 1101 University Ave

Career Start Year 2000

Number of shared co-authors 6

Wenqing Shui

iHuman Institute, ShanghaiTech University

Career Start Year 1998

Number of shared co-authors 1

David A Sarracino

Harvard Partners Center For Genetics and Genomics

Career Start Year 1998

Number of shared co-authors 1

Jo??lle Vinh

Universite PSL, LPC CNRS UMR8249

Career Start Year 1997

Number of shared co-authors 1

Mark Scalf

University of Wisconsin-Madison College of Letters and Sciences

Career Start Year 1997

Number of shared co-authors 7

Alexey I Nesvizhskii

University of Michigan ann arbor

Career Start Year 1994

Number of shared co-authors 20

Gary Siuzdak

Scripps Center for Metabolomics and Mass Spectrometry, The Scripps Research Institute

Career Start Year 1993

Number of shared co-authors 3

Albert J R Heck

Utrecht University

Career Start Year 1991

Number of shared co-authors 18

Karl Mechtler

IMP-Institute of Molecular Pathology

Career Start Year 1990

Number of shared co-authors 10

Matthias Mann

Max-Planck Institute of Biochemistry

Career Start Year 1989

Number of shared co-authors 20

David R Goodlett

University of Victoria

Career Start Year 1988

Number of shared co-authors 27

Timothy J Griffin

University of Minnesota

Career Start Year 1985

Number of shared co-authors 5

Robert L Moritz

Institute for Systems Biology

Career Start Year 1985

Number of shared co-authors 24

Joshua E Elias

Addenbrooke's Hospital, University of Cambridge

Career Start Year 1985

Number of shared co-authors 6

Birgit Schilling

Buck Institute for Research on Aging

Career Start Year 1985

Number of shared co-authors 12

Steven A Carr

Broad Institute of MIT and Harvard

Career Start Year 1980

Number of shared co-authors 21

Alma L Burlingame

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1964

Number of shared co-authors 16

John R Yates

TheScripps Research Institute

Career Start Year 1960

Number of shared co-authors 46

row(s) 1 - 30 of 30

Neil L Kelleher

Northwestern University

Co-authored papers 95

Ryan T Fellers

Northwestern University

Co-authored papers 30

Richard D LeDuc

Northwestern University

Co-authored papers 25

Joseph B Greer

Northwestern University

Co-authored papers 12

Caroline J DeHart

Frederick National Laboratory for Cancer Research

Co-authored papers 12

Jeannie M Camarillo

and the Feinberg School of Medicine, Northwestern University

Co-authored papers 8

Rafael D Melani

and the Feinberg School of Medicine, Northwestern University

Co-authored papers 7

Jacek W Sikora

and the Feinberg School of Medicine, Northwestern University

Co-authored papers 6

Matthew T Robey

Northwestern University

Co-authored papers 6

Steven M Patrie

Northwestern University

Co-authored papers 5

Timothy K Toby

and the Feinberg School of Medicine, Northwestern University

Co-authored papers 5

Luca Fornelli

University of Oklahoma

Co-authored papers 5

Lissa C Anderson

Florida State University

Co-authored papers 5

Henrique S Seckler

Northwestern University

Co-authored papers 5

Michael C Jewett

Northwestern University

Co-authored papers 4

Ying Ge

University of Wisconsin-Madison

Co-authored papers 4

Vincent R Gerbasi

Pacific Northwest National Laboratory

Co-authored papers 4

Ji Eun Lee

Soonchunhyang University College of Medicine, Bucheon Hospital

Co-authored papers 4

Jonathan V Sweedler

University of Illinois at Urbana-Champaign

Co-authored papers 3

Jeffrey N Agar

Northeastern University

Co-authored papers 3

Ari Melnick

Co-authored papers 3

Lloyd M Smith

University of Wisconsin-Madison College of Letters and Sciences

Co-authored papers 3

Eleonora Forte

Northwestern University Feinberg School of Medicine

Co-authored papers 3

Christopher L Hendrickson

Florida State University

Co-authored papers 2

Richard Koche

Memorial Sloan Kettering Cancer Center

Co-authored papers 2

Susan E Abbatiello

The Barnett Institute of Chemical and Biological Analysis, Northeastern University

Co-authored papers 2

Hartmut Schl??ter

University Medical Center Hamburg-Eppendorf

Co-authored papers 2

Kristina Srzenti??

and the Feinberg School of Medicine, Northwestern University

Co-authored papers 2

Nicolas L Young

Baylor College of Medicine, USA Center for Precision Environmental Health

Co-authored papers 2

Jack A Gilbert

Scripps Institution of Oceanography, University of California San Diego

Co-authored papers 2

1 - 30

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