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Author Details

Chikatoshi Kai
2000
39
28
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
20211142An atlas of combinatorial transcriptional regulation in mouse and man.Cell2010
21085627High sensitivity TSS prediction: estimates of locations where TSS cannot occur.PLoS One2010
20211142An atlas of combinatorial transcriptional regulation in mouse and man.Cell2010
21085627High sensitivity TSS prediction: estimates of locations where TSS cannot occur.PLoS One2010
19534823Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns.BMC Genomics2009
19534823Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns.BMC Genomics2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
18402656Hidden layers of human small RNAs.BMC Genomics2008
18402656Hidden layers of human small RNAs.BMC Genomics2008
18211718Towards defining the nuclear proteome.Genome Biol2008
18211718Towards defining the nuclear proteome.Genome Biol2008
17097837Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells.Gene2007
17897791Splicing bypasses 3' end formation signals to allow complex gene architectures.Gene2007
17308308Gemin2 plays an important role in stabilizing the survival of motor neuron complex.J Biol Chem2007
17571346Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.Nature2007
17097837Diversity of Ca2+-activated K+ channel transcripts in inner ear hair cells.Gene2007
17897791Splicing bypasses 3' end formation signals to allow complex gene architectures.Gene2007
17571346Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.Nature2007
17308308Gemin2 plays an important role in stabilizing the survival of motor neuron complex.J Biol Chem2007
16381948CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.Nucleic Acids Res2006
17156492Dynamic usage of transcription start sites within core promoters.Genome Biol2006
17254313Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.BMC Bioinformatics2006
16916456Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.Genome Biol2006
16507160Alternate transcription of the Toll-like receptor signaling cascade.Genome Biol2006
16507138Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.Genome Biol2006
16504016PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.BMC Bioinformatics2006
16683036Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.PLoS Genet2006
16683032Mice and men: their promoter properties.PLoS Genet2006
16683031The abundance of short proteins in the mammalian proteome.PLoS Genet2006
16683030Complex Loci in human and mouse genomes.PLoS Genet2006
16683029Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units.PLoS Genet2006
16683028A simple physical model predicts small exon length variations.PLoS Genet2006
16683027A method for similarity search of genomic positional expression using CAGE.PLoS Genet2006
16683026Clusters of internally primed transcripts reveal novel long noncoding RNAs.PLoS Genet2006
16683025Heterotachy in mammalian promoter evolution.PLoS Genet2006
16683022Pseudo-messenger RNA: phantoms of the transcriptome.PLoS Genet2006
16489339CAGE: cap analysis of gene expression.Nat Methods2006
16381948CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.Nucleic Acids Res2006
16381849LOCATE: a mouse protein subcellular localization database.Nucleic Acids Res2006
16645617Genome-wide analysis of mammalian promoter architecture and evolution.Nat Genet2006
17114936Discrimination of non-protein-coding transcripts from protein-coding mRNA.RNA Biol2006
16643283Subcellular localization of mammalian type II membrane proteins.Traffic2006
17254313Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.BMC Bioinformatics2006
17114936Discrimination of non-protein-coding transcripts from protein-coding mRNA.RNA Biol2006
17156492Dynamic usage of transcription start sites within core promoters.Genome Biol2006
16916456Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters.Genome Biol2006
16489339CAGE: cap analysis of gene expression.Nat Methods2006
16507160Alternate transcription of the Toll-like receptor signaling cascade.Genome Biol2006
16507138Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases.Genome Biol2006
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Collaborators

Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 37
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 30
Jun Kawai
RIKEN Center for Integrative Medical Sciences
Co-authored papers 30
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Mutsumi Kanamori-Katayama
Karolinska Institutet
Co-authored papers 12
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 11
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 11
Rohan D Teasdale
The University of Queensland
Co-authored papers 9
Martin C Frith
Artificial Intelligence Research Center, University of Tokyo
Co-authored papers 9
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 9
Sean M Grimmond
The University of Melbourne
Co-authored papers 9
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 9
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 8
Shiro Fukuda
Graduate School of Medicine, Osaka University
Co-authored papers 8
Takeya Kasukawa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Boris Lenhard
MRC London Institute of Medical Sciences
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Christine A Wells
The University of Melbourne
Co-authored papers 7
Albin Sandelin
University of Copenhagen
Co-authored papers 7
John S Mattick
Australia UNSW RNA Institute
Co-authored papers 6
J Lynn Fink
The University of Queensland Diamantina Institute, The University of Queensland
Co-authored papers 6
Sin Lam Tan
Co-authored papers 6
Timothy L Bailey
Co-authored papers 6
Rimantas Kodzius
Co-authored papers 5
Timothy Ravasi
Okinawa Institute of Science and Technology Graduate University
Co-authored papers 5
Pär G Engström
Co-authored papers 5
Christian Schönbach
Co-authored papers 5
Masaaki Furuno
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Claes Wahlestedt
Co-authored papers 5
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 5
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Co-authored papers 4
Release 1.2