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Author Details

Margaret R Woodhouse
USDA-ARS, Corn Insects and Crop Genetics Research Unit
2006
30
23
PMIDPaper TitleJournal TitlePublished Year
36755109Maize protein structure resources at the maize genetics and genomics database.Genetics2023
37935586Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications.Database (Oxford)2023
35997208Association mapping across a multitude of traits collected in diverse environments in maize.Gigascience2022
34353948De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.Science2021
33879057FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.BMC Bioinformatics2021
33710280Spatial transcriptional signatures define margin morphogenesis along the proximal-distal and medio-lateral axes in tomato (Solanum lycopersicum) leaves.Plant Cell2021
34406385qTeller: a tool for comparative multi-genomic gene expression analysis.Bioinformatics2021
34416864A pan-genomic approach to genome databases using maize as a model system.BMC Plant Biol2021
32434565Gapless assembly of maize chromosomes using long-read technologies.Genome Biol2020
31900107Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize.BMC Plant Biol2020
32122303GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations.BMC Genomics2020
32385271Effect of sequence depth and length in long-read assembly of the maize inbred NC358.Nat Commun2020
30407532MaizeGDB 2018: the maize multi-genome genetics and genomics database.Nucleic Acids Res2019
31210272GrainGenes: centralized small grain resources and digital platform for geneticists and breeders.Database (Oxford)2019
31604238Evolutionary flexibility in flooding response circuitry in angiosperms.Science2019
30798332Technological advances in maize breeding: past, present and future.Theor Appl Genet2019
30061736The maize W22 genome provides a foundation for functional genomics and transposon biology.Nat Genet2018
30239679AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.Database (Oxford)2018
29112853The Zygotic Transition Is Initiated in Unicellular Plant Zygotes with Asymmetric Activation of Parental Genomes.Dev Cell2017
26871271Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa.New Phytol2016
25743198A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis.Mol Plant2015
26523774The pineapple genome and the evolution of CAM photosynthesis.Nat Genet2015
24706847Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.Proc Natl Acad Sci U S A2014
22341793Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants.Curr Opin Plant Biol2012
22308264Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy.Genetics2012
22180627Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids.Plant Cell2011
20613864Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.PLoS Biol2010
20485521Transposed genes in Arabidopsis are often associated with flanking repeats.PLoS Genet2010
16219782The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize.Genetics2006
16968137Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors.PLoS Biol2006
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Collaborators

Carson M Andorf
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 13
Ethalinda K S Cannon
USDA-ARS, Corn Insects and Crop Genetics Research Unit
Co-authored papers 6
Taner Z Sen
USDA, Crop Improvement Genetics Research Unit, Western Regional Research Center
Co-authored papers 5
Doreen Ware
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 5
Lisa C Harper
Corn Insects and Crop Genetics Research Unit, USDA Agricultural Research Service
Co-authored papers 4
Brent S Pedersen
Center for Molecular Medicine, University Medical Center Utrecht
Co-authored papers 3
Sabarinath Subramaniam
University of Arizona
Co-authored papers 3
Haibao Tang
Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
Co-authored papers 3
Marcela K Tello-Ruiz
State University of New York at Old Westbury
Co-authored papers 2
Christine G Elsik
University of Missouri
Co-authored papers 2
Mary L Schaeffer
University of Missouri
Co-authored papers 2
Clay L Birkett
Cornell University
Co-authored papers 2
Gerard R Lazo
Western Regional Research Center, Crop Improvement and Genetics Research Unit
Co-authored papers 2
Nic Herndon
East Carolina University
Co-authored papers 1
David Grant
USDA-ARS Corn Insects and Crop Genetics Research Unit
Co-authored papers 1
Rex T Nelson
USDA, Corn Insects and Crop Genetics Research Unit, Iowa State University
Co-authored papers 1
Stephen P Ficklin
Washington State University
Co-authored papers 1
Jodi L Humann
Washington State University
Co-authored papers 1
Todd C Mockler
Danforth Foundation
Co-authored papers 1
Laurel Cooper
Oregon State University
Co-authored papers 1
Pierre Larmande
University Montpellier
Co-authored papers 1
Andrew D Farmer
National Center for Genome Resources
Co-authored papers 1
Clement Jonquet
University of Montpellier, CNRS
Co-authored papers 1
Daureen Nesdill
University of Utah
Co-authored papers 1
Victor Unda
Washington State University
Co-authored papers 1
Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 1
Bradford Condon
University of Tennessee
Co-authored papers 1
Michael C Schatz
Johns Hopkins University
Co-authored papers 1
Fritz J Sedlazeck
Baylor College of Medicine
Co-authored papers 1
Robert J Schmitz
University of Georgia
Co-authored papers 1
Release 1.2