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Author Details

Katrina M Waters
Pacific Northwest National Laboratory
1994
139
44
PMIDPaper TitleJournal TitlePublished Year
36844425Missing data in multi-omics integration: Recent advances through artificial intelligence.Front Artif Intell2023
375767163' RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism.Front Bioinform2023
37193127Metatranscriptomics analysis reveals a novel transcriptional and translational landscape during Middle East respiratory syndrome coronavirus infection.iScience2023
36944655The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes.Sci Data2023
36976966Coupling Environmental Whole Mixture Toxicity Screening with Unbiased RNA-Seq Reveals Site-Specific Biological Responses in Zebrafish.Toxics2023
36844425Missing data in multi-omics integration: Recent advances through artificial intelligence.Front Artif Intell2023
375767163' RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism.Front Bioinform2023
37193127Metatranscriptomics analysis reveals a novel transcriptional and translational landscape during Middle East respiratory syndrome coronavirus infection.iScience2023
36944655The Superfund Research Program Analytics Portal: linking environmental chemical exposure to biological phenotypes.Sci Data2023
36976966Coupling Environmental Whole Mixture Toxicity Screening with Unbiased RNA-Seq Reveals Site-Specific Biological Responses in Zebrafish.Toxics2023
36093370Concentration-response gene expression analysis in zebrafish reveals phenotypically-anchored transcriptional responses to retene.Front Toxicol2022
35763502Impact of acute temperature and air pollution exposures on adult lung function: A panel study of asthmatics.PLoS One2022
36093370Concentration-response gene expression analysis in zebrafish reveals phenotypically-anchored transcriptional responses to retene.Front Toxicol2022
35377459The Ahr2-Dependent wfikkn1 Gene Influences Zebrafish Transcriptome, Proteome, and Behavior.Toxicol Sci2022
35405507Evaluating predictive relationships between wristbands and urine for assessment of personal PAH exposure.Environ Int2022
35405507Evaluating predictive relationships between wristbands and urine for assessment of personal PAH exposure.Environ Int2022
35377459The Ahr2-Dependent wfikkn1 Gene Influences Zebrafish Transcriptome, Proteome, and Behavior.Toxicol Sci2022
35763502Impact of acute temperature and air pollution exposures on adult lung function: A panel study of asthmatics.PLoS One2022
34372702Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury.mBio2021
34051754Hypergraph models of biological networks to identify genes critical to pathogenic viral response.BMC Bioinformatics2021
33883556A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases.Sci Data2021
33929906CATMoS: Collaborative Acute Toxicity Modeling Suite.Environ Health Perspect2021
34517816Gene co-expression network analysis in zebrafish reveals chemical class specific modules.BMC Genomics2021
34609882Atomic Force Microscopy and Infrared Nanospectroscopy of COVID-19 Spike Protein for the Quantification of Adhesion to Common Surfaces.Langmuir2021
34372702Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury.mBio2021
33883556A resource of lipidomics and metabolomics data from individuals with undiagnosed diseases.Sci Data2021
33929906CATMoS: Collaborative Acute Toxicity Modeling Suite.Environ Health Perspect2021
34609882Atomic Force Microscopy and Infrared Nanospectroscopy of COVID-19 Spike Protein for the Quantification of Adhesion to Common Surfaces.Langmuir2021
34517816Gene co-expression network analysis in zebrafish reveals chemical class specific modules.BMC Genomics2021
34051754Hypergraph models of biological networks to identify genes critical to pathogenic viral response.BMC Bioinformatics2021
32827657The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity.Reprod Toxicol2020
31742994Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network.Anal Chem2020
32827657The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity.Reprod Toxicol2020
31742994Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network.Anal Chem2020
30582946Toxicokinetics of benzo[a]pyrene in humans: Extensive metabolism as determined by UPLC-accelerator mass spectrometry following oral micro-dosing.Toxicol Appl Pharmacol2019
31798197Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples.Trends Analyt Chem2019
31616667The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections.Front Cell Dev Biol2019
30582946Toxicokinetics of benzo[a]pyrene in humans: Extensive metabolism as determined by UPLC-accelerator mass spectrometry following oral micro-dosing.Toxicol Appl Pharmacol2019
30638385pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data.J Proteome Res2019
31527878Unified feature association networks through integration of transcriptomic and proteomic data.PLoS Comput Biol2019
31130617Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard.Int J Mol Sci2019
31485548Time-dependent behavioral data from zebrafish reveals novel signatures of chemical toxicity using point of departure analysis.Comput Toxicol2019
31262274Development of an environmental health tool linking chemical exposures, physical location and lung function.BMC Public Health2019
30891293Discovery of common chemical exposures across three continents using silicone wristbands.R Soc Open Sci2019
30667224P-Mart: Interactive Analysis of Ion Abundance Global Proteomics Data.J Proteome Res2019
31101000Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration.BMC Bioinformatics2019
31798197Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples.Trends Analyt Chem2019
31616667The Role of EGFR in Influenza Pathogenicity: Multiple Network-Based Approaches to Identify a Key Regulator of Non-lethal Infections.Front Cell Dev Biol2019
31527878Unified feature association networks through integration of transcriptomic and proteomic data.PLoS Comput Biol2019
31262274Development of an environmental health tool linking chemical exposures, physical location and lung function.BMC Public Health2019
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Collaborators

Bobbie-Jo M Webb-Robertson
Pacific Northwest National Laboratory
Co-authored papers 36
Thomas O Metz
Pacific Northwest National Laboratory
Co-authored papers 30
Susan C Tilton
Oregon State University
Co-authored papers 29
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 27
Melissa M Matzke
Pacific Northwest National Laboratory
Co-authored papers 21
Ralph S Baric
University of North Carolina
Co-authored papers 19
Jason E McDermott
Pacific Northwest National Laboratory
Co-authored papers 18
Robert L Tanguay
Cumming School of Medicine, University of Calgary
Co-authored papers 17
Michael G Katze
University of Washington
Co-authored papers 15
Joel G Pounds
Co-authored papers 14
Kelly G Stratton
Pacific Northwest National Laboratory
Co-authored papers 13
Amie J Eisfeld
Influenza Research Institute, University of Wisconsin-Madison
Co-authored papers 13
Amy C Sims
The University of North Carolina at Chapel Hill
Co-authored papers 13
Jon M Jacobs
Pacific Northwest National Laboratory
Co-authored papers 13
Lisa M Bramer
Co-authored papers 13
Lisa E Gralinski
University of North Carolina at Chapel Hill
Co-authored papers 12
Yoshihiro Kawaoka
Influenza Research Institute, University of Wisconsin
Co-authored papers 12
David E Williams
Co-authored papers 10
Marina A Gritsenko
Pacific Northwest National Laboratory
Co-authored papers 10
Hugh D Mitchell
Pacific Northwest National Laboratory (PNNL)
Co-authored papers 10
Jennifer E Kyle
Pacific Northwest National Laboratory
Co-authored papers 9
Anil K Shukla
Pacific Northwest National Laboratory
Co-authored papers 9
Vineet D Menachery
University of Texas Medical Branch
Co-authored papers 9
Young-Mo Kim
Hanyang University
Co-authored papers 8
Kristin E Burnum-Johnson
Pacific Northwest National Laboratory
Co-authored papers 7
Lisa Truong
Incyte Research Institute, Incyte Corporation
Co-authored papers 7
Chengjun Li
Harbin Veterinary Research Institute
Co-authored papers 7
Gabriele Neumann
Influenza Research Institute, University of Wisconsin-Madison
Co-authored papers 7
Matthew E Monroe
Pacific Northwest National Laboratory
Co-authored papers 7
Lisbeth K Siddens
Co-authored papers 7
Release 1.2