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Author Details

Christopher Quince
2004
104
46
PMIDPaper TitleJournal TitlePublished Year
36864029Population-level impacts of antibiotic usage on the human gut microbiome.Nat Commun2023
37996397Adaptive radiations in natural populations of prokaryotes: innovation is key.2023
37786716Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs.bioRxiv2023
37339626Enterosignatures define common bacterial guilds in the human gut microbiome.Cell Host Microbe2023
37069665Metabolic independence drives gut microbial colonization and resilience in health and disease.2023
37322120Antigen-driven colonic inflammation is associated with development of dysplasia in primary sclerosing cholangitis.Nat Med2023
36934439Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn's Disease.2023
36532459Functional responses of key marine bacteria to environmental change - toward genetic counselling for coastal waters.2022
36280853Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere.Microbiome2022
36212864Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate.Front Microbiol2022
35862821Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions.mSystems2022
36125951Single-cell genomics reveals population structures from evolutionary studies of .Microbial genomics2022
35660786Systematic review of donor and recipient predictive biomarkers of response to faecal microbiota transplantation in patients with ulcerative colitis.eBioMedicine2022
34244702Swarm v3: towards tera-scale amplicon clustering.2021
34225233Impact of sulfamethoxazole on a riverine microbiome.Water Research2021
34311761STRONG: metagenomics strain resolution on assembly graphs.2021
34301928Strainberry: automated strain separation in low-complexity metagenomes using long reads.Nature Communications2021
33235223The pathophysiology of bile acid diarrhoea: differences in the colonic microbiome, metabolome and bile acids.Scientific Reports2020
31910889Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance.Microbiome2020
31896565A Microbe Associated with Sleep Revealed by a Novel Systems Genetic Analysis of the Microbiome in Collaborative Cross Mice.Genetics2020
32170201Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.Communications Biology2020
32994285Size Shapes the Active Microbiome of Methanogenic Granules, Corroborating a Biofilm Life Cycle.mSystems2020
32582085Growth and Break-Up of Methanogenic Granules Suggests Mechanisms for Biofilm and Community Development.Frontiers in Microbiology2020
31408620Reply.Gastroenterology2019
31719078STOP-Colitis pilot trial protocol: a prospective, open-label, randomised pilot study to assess two possible routes of faecal microbiota transplant delivery in patients with ulcerative colitis.BMJ Open2019
30550821Treatment of Active Crohn's Disease With an Ordinary Food-based Diet That Replicates Exclusive Enteral Nutrition.Gastroenterology2019
31235840Recent mixing of Vibrio parahaemolyticus populations.ISME Journal2019
30661755Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.Cell2019
29255284Enterotypes in the landscape of gut microbial community composition.Nat Microbiol2018
28910698Temperature, inocula and substrate: Contrasting electroactive consortia, diversity and performance in microbial fuel cells.Bioelectrochemistry2018
29891866Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.Nature Microbiology2018
30042441Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes.Nature Microbiology2018
30033331Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.Curr Biol2018
29619022Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass.Frontiers in Microbiology2018
29440750Publisher Correction: Enterotypes in the landscape of gut microbial community composition.Nat Microbiol2018
28222161The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred.PLoS One2017
28733608Revealing higher than expected meiofaunal diversity in Antarctic sediments: a metabarcoding approach.Scientific Reports2017
28507535Bioreactor Scalability: Laboratory-Scale Bioreactor Design Influences Performance, Ecology, and Community Physiology in Expanded Granular Sludge Bed Bioreactors.Frontiers in Microbiology2017
28898207Shotgun metagenomics, from sampling to analysis.Nat Biotechnol2017
28934976DESMAN: a new tool for de novo extraction of strains from metagenomes.2017
28967888Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.Nat Methods2017
29220029Corrigendum: Shotgun metagenomics, from sampling to analysis.Nat Biotechnol2017
28028456Seqenv: linking sequences to environments through text mining.PeerJ2016
27022995Challenges in microbial ecology: building predictive understanding of community function and dynamics.ISME Journal2016
27150761Low-strength ultrasonication positively affects methanogenic granules toward higher AD performance: Implications from microbial community shift.Ultrasonics Sonochemistry2016
26968756Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data.BMC Bioinformatics2016
26875588Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines.Microb Biotechnol2016
26870609PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes.PeerJ2016
27356826Response to Kaakoush et al.American Journal of Gastroenterology2016
27456340The effect of DNA extraction methodology on gut microbiota research applications.BMC Res Notes2016
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