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Author Details

Mattia Pelizzola
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
2004
62
30
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
34864898Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions.Bioinformatics2022
34864898Identification, semantic annotation and comparison of combinations of functional elements in multiple biological conditions.Bioinformatics2022
33348360Dynamics of transcriptional and post-transcriptional regulation.Brief Bioinform2021
33835448Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma.Methods Mol Biol2021
33300180Translation is required for miRNA-dependent decay of endogenous transcripts.EMBO J2021
33348360Dynamics of transcriptional and post-transcriptional regulation.Brief Bioinform2021
34561421New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia.Cell Death Dis2021
34559589Computational methods for RNA modification detection from nanopore direct RNA sequencing data.RNA Biol2021
33835448Identification of Genes Post-Transcriptionally Regulated from RNA-seq: The Case Study of Liver Hepatocellular Carcinoma.Methods Mol Biol2021
34561421New insight into the catalytic -dependent and -independent roles of METTL3 in sustaining aberrant translation in chronic myeloid leukemia.Cell Death Dis2021
34559589Computational methods for RNA modification detection from nanopore direct RNA sequencing data.RNA Biol2021
33300180Translation is required for miRNA-dependent decay of endogenous transcripts.EMBO J2021
32425981Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts.Front Genet2020
31799607A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons.Nucleic Acids Res2020
32425981Direct RNA Sequencing for the Study of Synthesis, Processing, and Degradation of Modified Transcripts.Front Genet2020
31959844Ontology-driven integrative analysis of omics data through Onassis.Sci Rep2020
32765590INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species.Front Genet2020
33362872Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications.Front Genet2020
32978246Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling.Genome Res2020
31959844Ontology-driven integrative analysis of omics data through Onassis.Sci Rep2020
31799607A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons.Nucleic Acids Res2020
33362872Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications.Front Genet2020
32978246Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling.Genome Res2020
32765590INSPEcT-GUI Reveals the Impact of the Kinetic Rates of RNA Synthesis, Processing, and Degradation, on Premature and Mature RNA Species.Front Genet2020
30626100m6A-Dependent RNA Dynamics in T Cell Differentiation.Genes (Basel)2019
31626629Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice.PLoS Genet2019
30626100m6A-Dependent RNA Dynamics in T Cell Differentiation.Genes (Basel)2019
30866959m<sup>6</sup>A RNA modification and its writer/reader VIRMA/YTHDF3 in testicular germ cell tumors: a role in seminoma phenotype maintenance.J Transl Med2019
31334602An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation.EMBO Rep2019
31626629Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice.PLoS Genet2019
31334602An early Myc-dependent transcriptional program orchestrates cell growth during B-cell activation.EMBO Rep2019
30866959m<sup>6</sup>A RNA modification and its writer/reader VIRMA/YTHDF3 in testicular germ cell tumors: a role in seminoma phenotype maintenance.J Transl Med2019
29052185Identification of Differentially Methylated Regions in the Genome of Arabidopsis thaliana.Methods Mol Biol2018
29052185Identification of Differentially Methylated Regions in the Genome of Arabidopsis thaliana.Methods Mol Biol2018
30478432DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium.Sci Rep2018
29671387Positioning Europe for the EPITRANSCRIPTOMICS challenge.RNA Biol2018
30478432DNA methylation dynamics during embryonic development and postnatal maturation of the mouse auditory sensory epithelium.Sci Rep2018
29671387Positioning Europe for the EPITRANSCRIPTOMICS challenge.RNA Biol2018
27443262Compensatory RNA polymerase 2 loading determines the efficacy and transcriptional selectivity of JQ1 in Myc-driven tumors.Leukemia2017
28904013Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation.Genome Res2017
28581528DNA methylation variations are required for epithelial-to-mesenchymal transition induced by cancer-associated fibroblasts in prostate cancer cells.Oncogene2017
27443262Compensatory RNA polymerase 2 loading determines the efficacy and transcriptional selectivity of JQ1 in Myc-driven tumors.Leukemia2017
27142216Ontology-based annotations and semantic relations in large-scale (epi)genomics data.Brief Bioinform2017
27870833Integrative classification of human coding and noncoding genes through RNA metabolism profiles.Nat Struct Mol Biol2017
28904013Integrative analysis of RNA polymerase II and transcriptional dynamics upon MYC activation.Genome Res2017
28581528DNA methylation variations are required for epithelial-to-mesenchymal transition induced by cancer-associated fibroblasts in prostate cancer cells.Oncogene2017
27870833Integrative classification of human coding and noncoding genes through RNA metabolism profiles.Nat Struct Mol Biol2017
27142216Ontology-based annotations and semantic relations in large-scale (epi)genomics data.Brief Bioinform2017
26821571Degradation dynamics of microRNAs revealed by a novel pulse-chase approach.Genome Res2016
26860319LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer.BMC Bioinformatics2016
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Collaborators

The Salk Institute for Biological Studies
Co-authored papers 11
A. Menarini Biomarkers Singapore Pte Ltd
Co-authored papers 11
Co-authored papers 8
Center for Epigenomics, University of California San Diego
Co-authored papers 7
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
Co-authored papers 7
Co-authored papers 6
Cecil H. and Ida Green Center for Reproductive Biology Sciences
Co-authored papers 5
The Salk Institute for Biological Studies
Co-authored papers 5
Co-authored papers 4
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 3
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Co-authored papers 3
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 3
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 3
University of Georgia
Co-authored papers 3
Co-authored papers 3
Co-authored papers 2
The Salk Institute for Biological Studies
Co-authored papers 2
The Salk Institute for Biological Studies
Co-authored papers 2
European Institute of Oncology IRCCS
Co-authored papers 2
University of Zurich
Co-authored papers 2
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences
Co-authored papers 2
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University of California San Diego
Co-authored papers 2
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University of Turin and INFN
Co-authored papers 2
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Hospital Sirio-Libanes
Co-authored papers 1
Biomedical Center, Ludwig-Maximilians-Universitat of Munich
Co-authored papers 1