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Author Details

Agnieszka Karczyſska
2015
20
11
PMIDPaper TitleJournal TitlePublished Year
37473684BTLA-derived peptides as inhibitors of BTLA/HVEM complex formation - design, synthesis and biological evaluation.Biomed Pharmacother2023
34845623Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field.Methods in Molecular Biology2022
33079977UNRES-Dock-protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulations.2021
33238640Fragments of gD Protein as Inhibitors of BTLA/HVEM Complex Formation-Design, Synthesis, and Cellular Studies.International Journal of Molecular Sciences2020
32145953Scale-consistent approach to the derivation of coarse-grained force fields for simulating structure, dynamics, and thermodynamics of biopolymers.Progress in Molecular Biology and Translational Science2020
31963646Disulfide-Linked Peptides for Blocking BTLA/HVEM Binding.Int J Mol Sci2020
32169666Truncation of Huia versabilis Bowman-Birk inhibitor increases its selectivity, matriptase-1 inhibitory activity and proteolytic stability.2020
31999919Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.J Chem Inf Model2020
32155059Role of Glycosaminoglycans in Procathepsin B Maturation: Molecular Mechanism Elucidated by a Computational Study.Journal of Chemical Information and Modeling2020
31977133Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2020
31376733Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment.Journal of Molecular Graphics and Modelling2019
31569265Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2019
31612567Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.Proteins2019
30728903A structural model of the immune checkpoint CD160-HVEM complex derived from HDX-mass spectrometry and molecular modeling.Oncotarget2019
29134679Prediction of protein structure with the coarse-grained UNRES force field assisted by small X-ray scattering data and knowledge-based information.Proteins: Structure, Function and Bioinformatics2018
29860162Use of the UNRES force field in template-assisted prediction of protein structures and the refinement of server models: Test with CASP12 targets.J Mol Graph Model2018
29718313UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics.Nucleic Acids Research2018
28940211Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.J Comput Chem2017
27378298Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.2016
26263302A Maximum-Likelihood Approach to Force-Field Calibration.Journal of Chemical Information and Modeling2015
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