Author details

Full Name

Vivian S Gainer

Affiliation

ORCID

Career Start Year

2003

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36737471	Evaluation of the portability of computable phenotypes with natural language processing in the eMERGE network.	Sci Rep	2023
35090449	Under-specification as the source of ambiguity and vagueness in narrative phenotype algorithm definitions.	BMC Med Inform Decis Mak	2022
35765100	Development and validation of a trans-ancestry polygenic risk score for type 2 diabetes in diverse populations.	Genome Med	2022
36013271	The Evolution of a Large Biobank at Mass General Brigham.	J Pers Med	2022
36070785	The Digital Analytic Patient Reviewer (DAPR) for COVID-19 Data Mart Validation.	Methods Inf Med	2022
34974241	Geometric Features Associated with Middle Cerebral Artery Bifurcation Aneurysm Formation: A Matched Case-Control Study.	J Stroke Cerebrovasc Dis	2022
34849976	The Mass General Brigham Biobank Portal: an i2b2-based data repository linking disparate and high-dimensional patient data to support multimodal analytics.	J Am Med Inform Assoc	2022
34620889	An independently validated, portable algorithm for the rapid identification of COPD patients using electronic health records.	Sci Rep	2021
33637879	Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms.	Sci Rep	2021
33479035	Geometric variations associated with posterior communicating artery aneurysms.	J Neurointerv Surg	2021
33850243	Medical records-based chronic kidney disease phenotype for clinical care and "big data" observational and genetic studies.	NPJ Digit Med	2021
34113801	Development of a Coronavirus Disease 2019 (COVID-19) Application Ontology for the Accrual to Clinical Trials (ACT) network.	JAMIA Open	2021
33510194	Morphological variables associated with ruptured basilar tip aneurysms.	Sci Rep	2021
33307259	Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation.	World Neurosurg	2021
31404664	Use of Narrative Concepts in Electronic Health Records to Validate Associations Between Genetic Factors and Response to Treatment of Inflammatory Bowel Diseases.	Clin Gastroenterol Hepatol	2020
32548637	sureLDA: A multidisease automated phenotyping method for the electronic health record.	J Am Med Inform Assoc	2020
33087795	Surrounding vascular geometry associated with basilar tip aneurysm formation.	Sci Rep	2020
32665589	Age and morphology of posterior communicating artery aneurysms.	Sci Rep	2020
30988354	Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms.	Sci Rep	2019
31748751	High-throughput phenotyping with electronic medical record data using a common semi-supervised approach (PheCAP).	Nat Protoc	2019
31613361	High-throughput multimodal automated phenotyping (MAP) with application to PheWAS.	J Am Med Inform Assoc	2019
29850834	Morphological Variables Associated With Ruptured Middle Cerebral Artery Aneurysms.	Neurosurgery	2019
30665626	Identifying lupus patients in electronic health records: Development and validation of machine learning algorithms and application of rule-based algorithms.	Semin Arthritis Rheum	2019
29103103	Heroin Use Is Associated with Ruptured Saccular Aneurysms.	Transl Stroke Res	2018
28752411	Alcohol Consumption and Aneurysmal Subarachnoid Hemorrhage.	Transl Stroke Res	2018
30354989	Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms.	Stroke	2018
30135253	Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study.	Neurology	2018
30124903	A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments.	J Am Med Inform Assoc	2018
29622625	Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture.	Stroke	2018
29666432	Genetic validation of bipolar disorder identified by automated phenotyping using electronic health records.	Transl Psychiatry	2018
29126253	Enabling phenotypic big data with PheNorm.	J Am Med Inform Assoc	2018
29696479	Natural Language Processing Accurately Calculates Adenoma and Sessile Serrated Polyp Detection Rates.	Digestive Diseases and Sciences	2018
29203688	Antihyperglycemic Agents Are Inversely Associated With Intracranial Aneurysm Rupture.	Stroke	2018
29844027	Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms.	Stroke	2018
27632993	Surrogate-assisted feature extraction for high-throughput phenotyping.	J Am Med Inform Assoc	2017
28855408	Association of intracranial aneurysm rupture with smoking duration, intensity, and cessation.	Neurology	2017
27927935	Large-scale identification of patients with cerebral aneurysms using natural language processing.	Neurology	2017
27792870	Phenome-Wide Association Study of Autoantibodies to Citrullinated and Noncitrullinated Epitopes in Rheumatoid Arthritis.	Arthritis Rheumatol	2017
26332313	Identification of Nonresponse to Treatment Using Narrative Data in an Electronic Health Record Inflammatory Bowel Disease Cohort.	Inflamm Bowel Dis	2016
26933751	Comparative Effectiveness of Infliximab and Adalimumab in Crohn's Disease and Ulcerative Colitis.	Inflamm Bowel Dis	2016
26927184	The Biobank Portal for Partners Personalized Medicine: A Query Tool for Working with Consented Biobank Samples, Genotypes, and Phenotypes Using i2b2.	J Pers Med	2016
26905907	Statin Use Is Associated With Reduced Risk of Colorectal Cancer in Patients With Inflammatory Bowel Diseases.	Clin Gastroenterol Hepatol	2016
25213079	Mode of childbirth and long-term outcomes in women with inflammatory bowel diseases.	Dig Dis Sci	2015
25929596	Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources.	J Am Med Inform Assoc	2015
25827034	Validation of electronic health record phenotyping of bipolar disorder cases and controls.	Am J Psychiatry	2015
25911572	Development of phenotype algorithms using electronic medical records and incorporating natural language processing.	BMJ	2015
25864945	Diabetes and the risk of infections with immunomodulator therapy in inflammatory bowel diseases.	Aliment Pharmacol Ther	2015
25344930	Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record.	J Am Med Inform Assoc	2015
25849893	TYK2 protein-coding variants protect against rheumatoid arthritis and autoimmunity, with no evidence of major pleiotropic effects on non-autoimmune complex traits.	PLoS One	2015
26510685	Identification of subjects with polycystic ovary syndrome using electronic health records.	Reprod Biol Endocrinol	2015