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Author Details

Ala Trusina
Niels Bohr Institute, University of Copenhagen
2002
44
20
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36681690Jag1-Notch cis-interaction determines cell fate segregation in pancreatic development.Nat Commun2023
37633265A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation.Cell Syst2023
37792696Lineage tracing identifies heterogeneous hepatoblast contribution to cell lineages and postembryonic organ growth dynamics.PLoS Biol2023
35969041Transcriptional heterogeneity and cell cycle regulation as central determinants of Primitive Endoderm priming.Elife2022
35681011Identification of the central intermediate in the extra-embryonic to embryonic endoderm transition through single-cell transcriptomics.Nat Cell Biol2022
36044569Spatiotemporal NF-κB dynamics encodes the position, amplitude, and duration of local immune inputs.Sci Adv2022
33827924Establishment of heterochromatin in domain-size-dependent bursts.Proc Natl Acad Sci U S A2021
31986479Model to Link Cell Shape and Polarity with Organogenesis.iScience2020
30962358The fitness cost and benefit of phase-separated protein deposits.Mol Syst Biol2019
31640503Self-assembly, buckling and density-invariant growth of three-dimensional vascular networks.J R Soc Interface2019
31101715Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress.Proc Natl Acad Sci U S A2019
30477635Theoretical tool bridging cell polarities with development of robust morphologies.Elife2018
28928395Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis.Nat Commun2017
28700913Impact of Zygosity on Bimodal Phenotype Distributions.Biophys J2017
28700688Four simple rules that are sufficient to generate the mammalian blastocyst.PLoS Biol2017
27487915Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions.Nat Commun2016
27426983Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response.Cell Syst2016
27167753Nucleation and spreading of a heterochromatic domain in fission yeast.Nat Commun2016
24580844Stress induced telomere shortening: longer life with less mutations?BMC Syst Biol2014
25119658Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli.Eur Biophys J2014
23496543Noisy transcription factor NF-κB oscillations stabilize and sensitize cytokine signaling in space.Phys Rev E Stat Nonlin Soft Matter Phys2013
24204285Two portable recombination enhancers direct donor choice in fission yeast heterochromatin.PLoS Genet2013
22567122Fragile DNA repair mechanism reduces ageing in multicellular model.PLoS One2012
23114274Circuit architecture explains functional similarity of bacterial heat shock responses.Phys Biol2012
22883233IRE1α induces thioredoxin-interacting protein to activate the NLRP3 inflammasome and promote programmed cell death under irremediable ER stress.Cell Metab2012
22495927Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery.Nucleic Acids Res2012
21813617Targeted bacterial immunity buffers phage diversity.J Virol2011
22107676Ecosystems with mutually exclusive interactions self-organize to a state of high diversity.Phys Rev Lett2011
22181450Analyzing inflammatory response as excitable media.Phys Rev E Stat Nonlin Soft Matter Phys2011
21771307Modeling the NF-κB mediated inflammatory response predicts cytokine waves in tissue.BMC Syst Biol2011
20934871Modeling oscillatory control in NF-κB, p53 and Wnt signaling.Curr Opin Genet Dev2010
20976185A minimal model for multiple epidemics and immunity spreading.PLoS One2010
21029297The unfolded protein response and translation attenuation: a modelling approach.Diabetes Obes Metab2010
19703401Defining network topologies that can achieve biochemical adaptation.Cell2009
17961600Aging mechanism as the "down side" of adaptation: a network approach.J Theor Biol2008
19075238Rationalizing translation attenuation in the network architecture of the unfolded protein response.Proc Natl Acad Sci U S A2008
19026441Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions.Cell2008
17025720Degree landscapes in scale-free networks.Phys Rev E Stat Nonlin Soft Matter Phys2006
15698238Networks and cities: an information perspective.Phys Rev Lett2005
16477325Functional alignment of regulatory networks: a study of temperate phages.PLoS Comput Biol2005
16090509Communication boundaries in networks.Phys Rev Lett2005
15169201Hierarchy measures in complex networks.Phys Rev Lett2004
14524743Prisoners' dilemma in real-world acquaintance networks: spikes and quasiequilibria induced by the interplay between structure and dynamics.Phys Rev E Stat Nonlin Soft Matter Phys2003
12241214Dynamic instabilities induced by asymmetric influence: prisoners' dilemma game in small-world networks.Phys Rev E Stat Nonlin Soft Matter Phys2002
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Collaborators

Feroz R Papa
University of California san francisco
Co-authored papers 4
Chao Tang
Peking University
Co-authored papers 3
Aeid Igbaria
Inserm U2, University of Rennes
Co-authored papers 2
Beom-Jun Kim
Asan Medical Center, University of Ulsan College of Medicine
Co-authored papers 2
Philip I Merksamer
University of California san francisco
Co-authored papers 2
Wendell A Lim
University of California san francisco
Co-authored papers 1
Scott A Oakes
Pritzker School of Medicine, University of Chicago
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Christopher V E Wright
Vanderbilt University
Co-authored papers 1
Ido Amit
Weizmann Institute of Science
Co-authored papers 1
Jeffrey R Johnson
Gladstone Institutes
Co-authored papers 1
Firehiwott Tilahun
University of California san francisco
Co-authored papers 1
Nathaniel Heintz
Howard Hughes Medical Institute, The Rockefeller University
Co-authored papers 1
Madan Mohan Babu
St. Jude Children's Research Hospital
Co-authored papers 1
Sergei Maslov
University of Illinois Urbana-Champaign
Co-authored papers 1
Onn Brandman
Stanford University
Co-authored papers 1
Jonathan S Weissman
Whitehead Institute for Biomedical Research
Co-authored papers 1
Release 1.2