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Author Details

Fabio Vandin
University of Padova
2011
35
14
PMIDPaper TitleJournal TitlePublished Year
36124798Discovering significant evolutionary trajectories in cancer phylogenies.Bioinformatics2022
35583271SPRISS: approximating frequent k-mers by sampling reads, and applications.Bioinformatics2022
32577746Comparison of microbiome samples: methods and computational challenges.Brief Bioinform2021
33089107Identifying Drug Sensitivity Subnetworks with NETPHIX.iScience2020
31891535Fast Approximation of Frequent <i>k</i>-Mers and Applications to Metagenomics.J Comput Biol2020
30659261Enriched power of disease-concordant twin-case-only design in detecting interactions in genome-wide association studies.Eur J Hum Genet2019
31120875Efficient algorithms to discover alterations with complementary functional association in cancer.PLoS Comput Biol2019
30976291Differentially mutated subnetworks discovery.Algorithms Mol Biol2019
31024613NoMAS: A Computational Approach to Find Mutated Subnetworks Associated With Survival in Genome-Wide Cancer Studies.Front Genet2019
30626316CoExpresso: assess the quantitative behavior of protein complexes in human cells.BMC Bioinformatics2019
30138580Principles of Systems Biology, No. 31.Cell Syst2018
28009044Disease-Concordant Twins Empower Genetic Association Studies.Ann Hum Genet2017
28934488De novo pathway-based biomarker identification.Nucleic Acids Res2017
28768687HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology.Genome Res2017
28659971Computational Methods for Characterizing Cancer Mutational Heterogeneity.Front Genet2017
27794558Efficient detection of differentially methylated regions using DiMmeR.Bioinformatics2017
26813760Reply: Co-occurrence of MYC amplification and TP53 mutations in human cancer.Nat Genet2016
28187410Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and MethylationEPIC data processing.J Integr Bioinform2016
26645471On the Sample Complexity of Cancer Pathways Identification.J Comput Biol2016
27485716Erratum to: CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer.Genome Biol2016
26831219Differentially Methylated Genomic Regions in Birth-Weight Discordant Twin Pairs.Ann Hum Genet2016
25501392Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes.Nat Genet2015
26253137CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer.Genome Biol2015
25950620Accurate computation of survival statistics in genome-wide studies.PLoS Comput Biol2015
25785493Simultaneous inference of cancer pathways and tumor progression from cross-sectional mutation data.J Comput Biol2015
24479672Identifying driver mutations in sequenced cancer genomes: computational approaches to enable precision medicine.Genome Med2014
23383999Ballast: a ball-based algorithm for structural motifs.J Comput Biol2013
24132290Mutational landscape and significance across 12 major cancer types.Nature2013
23634996Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.N Engl J Med2013
21653252De novo discovery of mutated driver pathways in cancer.Genome Res2012
22954134Finding driver pathways in cancer: models and algorithms.Algorithms Mol Biol2012
22722839The mutational landscape of lethal castration-resistant prostate cancer.Nature2012
22174262Discovery of mutated subnetworks associated with clinical data in cancer.Pac Symp Biocomput2012
21417937MADMX: a strategy for maximal dense motif extraction.J Comput Biol2011
21385051Algorithms for detecting significantly mutated pathways in cancer.J Comput Biol2011
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Collaborators

Benjamin J Raphael
Princeton University
Co-authored papers 15
Hsin-Ta Wu
Co-authored papers 5
Jan Baumbach
University of Hamburg
Co-authored papers 5
Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 3
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McDonnell Genome Institute, Washington University in St. Louis
Co-authored papers 3
Dorit S Hochbaum
University of California berkeley
Co-authored papers 3
Beifang Niu
Co-authored papers 2
Christopher A Miller
Washington University School of Medicine
Co-authored papers 2
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Washington University
Co-authored papers 2
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University of California at Berkeley
Co-authored papers 2
Timothy J Ley
Washington University School of Medicine
Co-authored papers 2
Charles Lu
Co-authored papers 2
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Washington University in St Louis
Co-authored papers 2
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Broad Institute of the Massachusetts Institute of Technology and Harvard
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University of California los angeles
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Amy G Robertson
Present address: Dxige Research Inc.
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Bonnie Berger
Massachusetts Institute of Technology
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Rogel Cancer Center, University of Michigan Medical School ann arbor
Co-authored papers 1
Peter J Oefner
Institute of Functional Genomics, University of Regensburg
Co-authored papers 1
Michael Altenbuchinger
University Medical Center Gottingen
Co-authored papers 1
Aaron Black
Co-authored papers 1
Greg Eley
Co-authored papers 1
Michael Mayo
Co-authored papers 1
Heidi J Sofia
National Human Genome Research Institute
Co-authored papers 1
Margi Sheth
Co-authored papers 1
Timothy J Triche
Center for Epigenetics, Van Andel Research Institute
Co-authored papers 1
Rainer Spang
University of Regensburg
Co-authored papers 1
Release 1.2