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Author Details

Guanghua Xiao
The University of Texas Southwestern Medical Center
2005
181
51
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
38043788Deep Learning-Based H-Score Quantification of Immunohistochemistry-Stained Images.Mod Pathol2024
36454649Global chromatin landscapes identify candidate noncoding modifiers of cardiac rhythm.J Clin Invest2023
37956387Osteosarcoma Explorer: A Data Commons With Clinical, Genomic, Protein, and Tissue Imaging Data for Osteosarcoma Research.JCO Clin Cancer Inform2023
37619429Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach.Comput Methods Programs Biomed2023
37698582Artificial intelligence in mental healthcare: an overview and future perspectives.Br J Radiol2023
37546786ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data.bioRxiv2023
37568707A Deep Learning Onion Peeling Approach to Measure Oral Epithelium Layer Number.Cancers (Basel)2023
37255415A Comparative Study of Neuroendocrine Heterogeneity in Small Cell Lung Cancer and Neuroblastoma.Mol Cancer Res2023
36945650Spatial Transcriptomics Arena (STAr): an Integrated Platform for Spatial Transcriptomics Methodology Research.bioRxiv2023
37107679Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images.Genes (Basel)2023
37378310Dissecting molecular, pathological, and clinical features associated with tumor neural/neuroendocrine heterogeneity.iScience2023
37171983A comparative study of neuroendocrine heterogeneity in small cell lung cancer and neuroblastoma.Mol Cancer Res2023
37100227A Deep Learning Approach for Histology-Based Nucleus Segmentation and Tumor Microenvironment Characterization.Mod Pathol2023
37461694Deep Learning of Cell Spatial Organizations Identifies Clinically Relevant Insights in Tissue Images.Res Sq2023
36890029Deep learning in digital pathology for personalized treatment plans of cancer patients.Semin Diagn Pathol2023
36721313Deep learning-based pathology image analysis predicts cancer progression risk in patients with oral leukoplakia.Cancer Med2023
36647832Features of tumor-microenvironment images predict targeted therapy survival benefit in patients with EGFR-mutant lung cancer.J Clin Invest2023
36669682Enhanced Pathology Image Quality with Restore-Generative Adversarial Network.Am J Pathol2023
34773277RCRdiff: A fully integrated Bayesian method for differential expression analysis using raw NanoString nCounter data.Stat Med2022
35510944STING controls energy stress-induced autophagy and energy metabolism via STX17.J Cell Biol2022
35390316Deep Learning of Rhabdomyosarcoma Pathology Images for Classification and Survival Outcome Prediction.Am J Pathol2022
35777465MB-SupCon: Microbiome-based Predictive Models via Supervised Contrastive Learning.J Mol Biol2022
35871762A Bayesian modified Ising model for identifying spatially variable genes from spatial transcriptomics data.Stat Med2022
35869424SAFARI: shape analysis for AI-segmented images.BMC Med Imaging2022
35927477Sprod for de-noising spatially resolved transcriptomics data based on position and image information.Nat Methods2022
36077736A Pan-Cancer Assessment of <i>RB1</i>/<i>TP53</i> Co-Mutations.Cancers (Basel)2022
34751162Lung Cancer Computational Biology and Resources.Cold Spring Harb Perspect Med2022
32770205Spatial molecular profiling: platforms, applications and analysis tools.Brief Bioinform2021
33495338Tumor-suppressor function of Beclin 1 in breast cancer cells requires E-cadherin.Proc Natl Acad Sci U S A2021
33543271MB-GAN: Microbiome Simulation via Generative Adversarial Network.Gigascience2021
33713107MetaPrism: A versatile toolkit for joint taxa/gene analysis of metagenomic sequencing data.G3 (Bethesda)2021
33841507SMIXnorm: Fast and Accurate RNA-Seq Data Normalization for Formalin-Fixed Paraffin-Embedded Samples.Front Genet2021
33750914Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer.Commun Biol2021
33500426A deep learning-based model for screening and staging pneumoconiosis.Sci Rep2021
33604654Evaluating short-term forecasting of COVID-19 cases among different epidemiological models under a Bayesian framework.Gigascience2021
34146105Bayesian modeling of spatial molecular profiling data via Gaussian process.Bioinformatics2021
34081116Assessing consistency across functional screening datasets in cancer cells.Bioinformatics2021
31844880A Bayesian zero-inflated negative binomial regression model for the integrative analysis of microbiome data.Biostatistics2021
33328639Sorting nexin 5 mediates virus-induced autophagy and immunity.Nature2021
31501522Correction: LCE: an open web portal to explore gene expression and clinical associations in lung cancer.Oncogene2020
31756521Dysfunctional adaptive immune response in adolescents and young adults with suicide behavior.Psychoneuroendocrinology2020
31929521VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning.PLoS Comput Biol2020
32051584TLR9 and beclin 1 crosstalk regulates muscle AMPK activation in exercise.Nature2020
31947823Large-Scale Profiling of RBP-circRNA Interactions from Public CLIP-Seq Datasets.Genes (Basel)2020
31915129Computational Staining of Pathology Images to Study the Tumor Microenvironment in Lung Cancer.Cancer Res2020
31941841Interaction between the autophagy protein Beclin 1 and Na+,K+-ATPase during starvation, exercise, and ischemia.JCI Insight2020
31972235Mice With Increased Numbers of Polyploid Hepatocytes Maintain Regenerative Capacity But Develop Fewer Hepatocellular Carcinomas Following Chronic Liver Injury.Gastroenterology2020
32908981The immune vulnerability landscape of the 2019 Novel Coronavirus, SARS-CoV-2.bioRxiv2020
32953482Molecular differences across invasive lung adenocarcinoma morphological subgroups.Transl Lung Cancer Res2020
32984844eIF5B drives integrated stress response-dependent translation of PD-L1 in lung cancer.Nat Cancer2020
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Collaborators

Quantitative Biomedical Research Center
Co-authored papers 92
Southwestern Medical Center, University of Texas
Co-authored papers 27
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Co-authored papers 25
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Co-authored papers 22
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Co-authored papers 13
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Co-authored papers 11
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Co-authored papers 6
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Co-authored papers 6
Bill & Melinda Gates Foundation
Co-authored papers 5
University of Georgia
Co-authored papers 5
F. Hoffmann-La Roche Ltd
Co-authored papers 4
University of British Columbia
Co-authored papers 4
University of Texas Southwestern Medical Center
Co-authored papers 4
Children's Hospital Oakland Research Institute
Co-authored papers 4
University of British Columbia
Co-authored papers 4
West Virginia University
Co-authored papers 4
University of Oxford
Co-authored papers 4
Co-authored papers 3
Co-authored papers 3
Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences
Co-authored papers 3
Institute of Computational Biomedicine, Heidelberg University
Co-authored papers 3
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Broad Institute of MIT and Harvard
Co-authored papers 3
Institute for Systems Biology
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The University of Texas MD Anderson Cancer Center
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National Institute of Environmental Health Sciences
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McDermott Center for Human Growth and Development.
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