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Author Details

John K Colbourne
University of Birmingham
1996
107
40
PMIDPaper TitleJournal TitlePublished Year
37036230Assessment of Chemical Toxicity in Adult Drosophila Melanogaster.J Vis Exp2023
37933221100 years of anthropogenic impact causes changes in freshwater functional biodiversity.Elife2023
37638757The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome.Nucleic Acids Res2023
36952002Modernizing persistence-bioaccumulation-toxicity (PBT) assessment with high throughput animal-free methods.Arch Toxicol2023
34672105Refining the evolutionary time machine: An assessment of whole genome amplification using single historical Daphnia eggs.Mol Ecol Resour2022
35655252Combined exome and transcriptome sequencing of non-muscle-invasive bladder cancer: associations between genomic changes, expression subtypes, and clinical outcomes.Genome Med2022
36169655<i>Daphnia</i> as a Sentinel Species for Environmental Health Protection: A Perspective on Biomonitoring and Bioremediation of Chemical Pollution.Environ Sci Technol2022
35094093Knowledge-Driven Approaches to Create the MTox700+ Metabolite Panel for Predicting Toxicity.Toxicol Sci2022
34333066Progress towards an OECD reporting framework for transcriptomics and metabolomics in regulatory toxicology.Regul Toxicol Pharmacol2021
34262034Extensive standing genetic variation from a small number of founders enables rapid adaptation in Daphnia.Nat Commun2021
32338428Multigenerational Exposures of Daphnia Magna to Pristine and Aged Silver Nanoparticles: Epigenetic Changes and Phenotypical Ageing Related Effects.Small2020
31906859A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex.BMC Genomics2020
31669395Vision of a near future: Bridging the human health-environment divide. Toward an integrated strategy to understand mechanisms across species for chemical safety assessment.Toxicol In Vitro2020
31986136Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis.PLoS Genet2020
32092270Perfluoroalkyl Substances Stimulate Insulin Secretion by Islet β Cells via G Protein-Coupled Receptor 40.Environ Sci Technol2020
33244100Spatio-temporal processes drive fine-scale genetic structure in an otherwise panmictic seabird population.Sci Rep2020
33391708Centennial clonal stability of asexual <i>Daphnia</i> in Greenland lakes despite climate variability.Ecol Evol2020
32602888Broccoli: Combining Phylogenetic and Network Analyses for Orthology Assignment.Mol Biol Evol2020
30608651Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna.Environ Sci Technol2019
31738529Dynamics of Cadmium Acclimation in <i>Daphnia pulex</i>: Linking Fitness Costs, Cross-Tolerance, and Hyper-Induction of Metallothionein.Environ Sci Technol2019
31083411Improved Algal Toxicity Test System for Robust <i>Omics</i>-Driven Mode-of-Action Discovery in <i>Chlamydomonas reinhardtii</i>.Metabolites2019
30872717Transgenerational response to early spring warming in Daphnia.Sci Rep2019
28746735Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.Mol Ecol2018
29900069Scan, extract, wrap, compute-a 3D method to analyse morphological shape differences.PeerJ2018
30060190Pattern of DNA Methylation in Daphnia: Evolutionary Perspective.Genome Biol Evol2018
29979584Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish.Environ Sci Technol2018
30271891Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms.Commun Biol2018
30594127Mitotic activity patterns and cytoskeletal changes throughout the progression of diapause developmental program in Daphnia.BMC Cell Biol2018
29783951The transcriptomic and proteomic responses of Daphnia pulex to changes in temperature and food supply comprise environment-specific and clone-specific elements.BMC Genomics2018
29697867How omics technologies can enhance chemical safety regulation: perspectives from academia, government, and industry: The Perspectives column is a regular series designed to discuss and evaluate potentially competing viewpoints and research findings on current environmental issues.Environ Toxicol Chem2018
29634279The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.Environ Sci Technol2018
29255013Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.Proc Natl Acad Sci U S A2018
28525648The Role of Omics in the Application of Adverse Outcome Pathways for Chemical Risk Assessment.Toxicol Sci2017
28201664The landscape of extreme genomic variation in the highly adaptable Atlantic killifish.Genome Biol Evol2017
28140384Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.Sci Data2017
28854641Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia.Genome Biol Evol2017
26685998Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna.Chromosoma2016
27940876The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish.Science2016
27503718Thermal variation and factors influencing vertical migration behavior in Daphnia populations.J Therm Biol2016
27561358OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.BMC Genomics2016
27164179Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.Sci Data2016
25410011Differential transcriptomic responses of ancient and modern Daphnia genotypes to phosphorus supply.Mol Ecol2015
26444857Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii.BMC Genomics2015
26550707Novel Cadmium Responsive MicroRNAs in Daphnia pulex.Environ Sci Technol2015
26158383Synergistic interactions of biotic and abiotic environmental stressors on gene expression.Genome2015
25799112Ionotropic glutamate receptors mediate inducible defense in the water flea Daphnia pulex.PLoS One2015
24198265Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird.J Exp Biol2014
25431334An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.BMC Genomics2014
25609551Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.Genome Biol2014
25282344Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia.BMC Genomics2014
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Collaborators

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National Marine Biodiversity Institute of Korea
Co-authored papers 15
University of Notre Dame
Co-authored papers 13
Indiana University
Co-authored papers 10
University of Rochester
Co-authored papers 8
Co-authored papers 7
University of Maryland Baltimore County
Co-authored papers 5
Indiana University
Co-authored papers 5
Baylor College of Medicine
Co-authored papers 4
Geisel School of Medicine, Dartmouth College
Co-authored papers 4
Institute of Infection, University of Liverpool
Co-authored papers 3
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Co-authored papers 3
University of Illinois at Champaign-Urbana
Co-authored papers 3
Center for Genomics and Bioinformatics, Indiana University
Co-authored papers 3
Institute of Infection, University of Liverpool
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Williams College
Co-authored papers 2
Co-authored papers 2
University of California
Co-authored papers 2
Broad Institute
Co-authored papers 2
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University of Wurzburg
Co-authored papers 2
Tokyo Institute of Technology
Co-authored papers 2
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Dartmouth College
Co-authored papers 2
Harvard University
Co-authored papers 2
Arizona State University
Co-authored papers 2
University of Geneva Medical School
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Institute of Biology I (Zoology), Albert Ludwig University Freiburg
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University of Colorado Anschutz Medical Campus
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