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Author Details

Michael R Hoopmann
Institute for Systems Biology
2007
70
29
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37653270Proteomic changes induced by longevity-promoting interventions in mice.Geroscience2024
36629399Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline.J Proteome Res2023
38012377Author Correction: Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers.Commun Biol2023
37904046Structural surfaceomics reveals an AML-specific conformation of integrin β<sub>2</sub> as a CAR T cellular therapy target.Nat Cancer2023
37481675Lifespan-extending interventions induce consistent patterns of fatty acid oxidation in mouse livers.Commun Biol2023
37969874The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020).J Biomol Tech2023
36780661Integrating Genetics, Transcriptomics, and Proteomics in Lung Tissue to Investigate Chronic Obstructive Pulmonary Disease.Am J Respir Cell Mol Biol2023
36648445Trans-Proteomic Pipeline: Robust Mass Spectrometry-Based Proteomics Data Analysis Suite.J Proteome Res2023
367340952023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software.J Proteome Res2023
36598107The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.J Proteome Res2023
35184559Discovery and Visualization of Uncharacterized Drug-Protein Adducts Using Mass Spectrometry.Anal Chem2022
33139880Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics.Nat Microbiol2021
337946452021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job.J Proteome Res2021
33534803A redox-active crosslinker reveals an essential and inhibitable oxidative folding network in the endoplasmic reticulum of malaria parasites.PLoS Pathog2021
33529024SPACEPro: A Software Tool for Analysis of Protein Sample Cleavage for Tandem Mass Spectrometry.J Proteome Res2021
34648730Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period.Curr Biol2021
34668408Lung proteomic biomarkers associated with chronic obstructive pulmonary disease.Am J Physiol Lung Cell Mol Physiol2021
34724830Plasmodium falciparum Calcium-Dependent Protein Kinase 4 is Critical for Male Gametogenesis and Transmission to the Mosquito Vector.mBio2021
31049579Absence of full-length dystrophin impairs normal maturation and contraction of cardiomyocytes derived from human-induced pluripotent stem cells.Cardiovasc Res2020
33166149Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project.J Proteome Res2020
33077707Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance.Nat Commun2020
33067471DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics.Nat Commun2020
33065067Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry.Structure2020
30704244Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science.J Proteome Res2019
31290668PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline.J Proteome Res2019
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
29400476StPeter: Seamless Label-Free Quantification with the Trans-Proteomic Pipeline.J Proteome Res2018
30017480The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals.Curr Biol2018
30259924Robust determination of differential abundance in shotgun proteomics using nonparametric statistics.Mol Omics2018
29977167ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data.J Biomol Tech2018
29631402A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms.J Proteome Res2018
27990823ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments.J Proteome Res2017
26744403The 5300-year-old Helicobacter pylori genome of the Iceman.Science2016
26549429Testing and Validation of Computational Methods for Mass Spectrometry.J Proteome Res2016
27453469Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.Cell2016
27469004An Open Data Format for Visualization and Analysis of Cross-Linked Mass Spectrometry Results.J Am Soc Mass Spectrom2016
25812159Kojak: efficient analysis of chemically cross-linked protein complexes.J Proteome Res2015
28721231Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks.NPJ Biofilms Microbiomes2015
26560994Decreased Gap Width in a Cylindrical High-Field Asymmetric Waveform Ion Mobility Spectrometry Device Improves Protein Discovery.Anal Chem2015
26560693The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling.Nat Commun2015
26419769reSpect: software for identification of high and low abundance ion species in chimeric tandem mass spectra.J Am Soc Mass Spectrom2015
26115965A deeper look into Comet--implementation and features.J Am Soc Mass Spectrom2015
25862149Quantitative proteogenomic profiling of epidermal barrier formation in vitro.J Dermatol Sci2015
25182276Crux: rapid open source protein tandem mass spectrometry analysis.J Proteome Res2014
25424998Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage.Nat Commun2014
25230952Kinetochore biorientation in Saccharomyces cerevisiae requires a tightly folded conformation of the Ndc80 complex.Genetics2014
23142544Current algorithmic solutions for peptide-based proteomics data generation and identification.Curr Opin Biotechnol2013
24074221Mass fingerprinting of complex mixtures: protein inference from high-resolution peptide masses and predicted retention times.J Proteome Res2013
23590889Performance evaluation of a dual linear ion trap-Fourier transform ion cyclotron resonance mass spectrometer for proteomics research.J Proteomics2013
23215161The state of the human proteome in 2012 as viewed through PeptideAtlas.J Proteome Res2013
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Co-authored papers 18
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Co-authored papers 12
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Co-authored papers 9
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Co-authored papers 8
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University of Washington
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University of Washington
Co-authored papers 7
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University of Texas Health Science Center at San Antonio Texas78229 USA.
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Florida State University
Co-authored papers 6
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University of California Irvine
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Co-authored papers 3
Andrea Sinz
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 3
Thomas Rattei
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Christoph H Borchers
McGill University
Co-authored papers 2
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 2
Alexander Leitner
ETH Zurich
Co-authored papers 2
Michael G??tze
and Pharmacy, Freie Universitat Berlin
Co-authored papers 2
Albert J R Heck
Utrecht University
Co-authored papers 2
Karl Mechtler
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