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Author Details

Tao Wang
University of Texas Southwestern Medical Center
2014
66
30
PMIDPaper TitleJournal TitlePublished Year
36413126T-Cell Receptor Repertoire Sequencing in the Era of Cancer Immunotherapy.Clin Cancer Res2023
36993727Positive selection of somatically mutated clones identifies adaptive pathways in metabolic liver disease.bioRxiv2023
37107679Deep-Learning-Based Hepatic Ploidy Quantification Using H&E Histopathology Images.Genes (Basel)2023
37040760Positive selection of somatically mutated clones identifies adaptive pathways in metabolic liver disease.Cell2023
36898872Phase 2 Trial of Stereotactic Ablative Radiotherapy for Patients with Primary Renal Cancer.Eur Urol2023
35128358BepiTBR: T-B reciprocity enhances B cell epitope prediction.iScience2022
36037364USP13 promotes deubiquitination of ZHX2 and tumorigenesis in kidney cancer.Proc Natl Acad Sci U S A2022
36065066Ectopic JAK-STAT activation enables the transition to a stem-like and multilineage state conferring AR-targeted therapy resistance.Nat Cancer2022
36303017Netie: inferring the evolution of neoantigen-T cell interactions in tumors.Nat Methods2022
35927477Sprod for de-noising spatially resolved transcriptomics data based on position and image information.Nat Methods2022
32810290Dominant atopy risk mutations identified by mouse forward genetic analysis.Allergy2021
36003885Deep learning-based prediction of the T cell receptor-antigen binding specificity.Nat Mach Intell2021
33750914Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer.Commun Biol2021
33632817Liver homeostasis is maintained by midlobular zone 2 hepatocytes.Science2021
34551906Outcome and Immune Correlates of a Phase II Trial of High-Dose Interleukin-2 and Stereotactic Ablative Radiotherapy for Metastatic Renal Cell Carcinoma.Clin Cancer Res2021
34608135Determinants of renal cell carcinoma invasion and metastatic competence.Nat Commun2021
34782469De novo germline mutation in the dual specificity phosphatase 10 gene accelerates autoimmune diabetes.Proc Natl Acad Sci U S A2021
34210685Deciphering Intratumoral Molecular Heterogeneity in Clear Cell Renal Cell Carcinoma with a Radiogenomics Platform.Clin Cancer Res2021
33408405Mapping the functional landscape of T cell receptor repertoires by single-T cell transcriptomics.Nat Methods2021
33406427Overcoming Expressional Drop-outs in Lineage Reconstruction from Single-Cell RNA-Sequencing Data.Cell Rep2021
33338425DNA Sensing in Mismatch Repair-Deficient Tumor Cells Is Essential for Anti-tumor Immunity.Cancer Cell2021
32770205Spatial molecular profiling: platforms, applications and analysis tools.Brief Bioinform2021
32271170Pancreatic tropism of metastatic renal cell carcinoma.JCI Insight2020
34386776Dual ARID1A/ARID1B loss leads to rapid carcinogenesis and disruptive redistribution of BAF complexes.Nat Cancer2020
32086382Tumor neoantigenicity assessment with CSiN score incorporates clonality and immunogenicity to predict immunotherapy outcomes.Sci Immunol2020
31727677HIF-2 Complex Dissociation, Target Inhibition, and Acquired Resistance with PT2385, a First-in-Class HIF-2 Inhibitor, in Patients with Clear Cell Renal Cell Carcinoma.Clin Cancer Res2020
31899548Uncovering Biological Factors That Regulate Hepatocellular Carcinoma Growth Using Patient-Derived Xenograft Assays.Hepatology2020
31947823Large-Scale Profiling of RBP-circRNA Interactions from Public CLIP-Seq Datasets.Genes (Basel)2020
31972235Mice With Increased Numbers of Polyploid Hepatocytes Maintain Regenerative Capacity But Develop Fewer Hepatocellular Carcinomas Following Chronic Liver Injury.Gastroenterology2020
33158953Complement as Prognostic Biomarker and Potential Therapeutic Target in Renal Cell Carcinoma.J Immunol2020
32908981The immune vulnerability landscape of the 2019 Novel Coronavirus, SARS-CoV-2.bioRxiv2020
32676589DNA Repair Gene Mutations as Predictors of Immune Checkpoint Inhibitor Response beyond Tumor Mutation Burden.Cell Rep Med2020
32839204Immune Checkpoint Inhibition is Safe and Effective for Liver Cancer Prevention in a Mouse Model of Hepatocellular Carcinoma.Cancer Prev Res (Phila)2020
30621577Identifying genes with tri-modal association with survival and tumor grade in cancer patients.BMC Bioinformatics2019
31336988SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples.Genes (Basel)2019
31073040LMBR1L regulates lymphopoiesis through Wnt/β-catenin signaling.Science2019
31057324Development and Validation of a Nomogram Prognostic Model for Patients With Advanced Non-Small-Cell Lung Cancer.Cancer Inform2019
29795268Large-scale forward genetics screening identifies Trpa1 as a chemosensor for predator odor-evoked innate fear behaviors.Nat Commun2018
29884728An Empirical Approach Leveraging Tumorgrafts to Dissect the Tumor Microenvironment in Renal Cell Carcinoma Identifies Missing Link to Prognostic Inflammatory Factors.Cancer Discov2018
29880288Usefulness of a Simple Algorithm to Identify Hypertensive Patients Who Benefit from Intensive Blood Pressure Lowering.Am J Cardiol2018
30279225The class I myosin MYO1D binds to lipid and protects against colitis.Dis Model Mech2018
29382827Probability of phenotypically detectable protein damage by ENU-induced mutations in the Mutagenetix database.Nat Commun2018
27864015Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data.Lancet Oncol2017
28137874IgD class switching is initiated by microbiota and limited to mucosa-associated lymphoid tissue in mice.Proc Natl Acad Sci U S A2017
28137860Creatine maintains intestinal homeostasis and protects against colitis.Proc Natl Acad Sci U S A2017
28224499Finding RNA-Protein Interaction Sites Using HMMs.Methods Mol Biol2017
28481222Hepatic metal ion transporter ZIP8 regulates manganese homeostasis and manganese-dependent enzyme activity.J Clin Invest2017
28473526Modeling Renal Cell Carcinoma in Mice: <i>Bap1</i> and <i>Pbrm1</i> Inactivation Drive Tumor Grade.Cancer Discov2017
28988802A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines.Cell Syst2017
28615918Lung Cancer Pathological Image Analysis Using a Hidden Potts Model.Cancer Inform2017
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Collaborators

Yang Xie
Quantitative Biomedical Research Center
Co-authored papers 26
Guanghua Xiao
The University of Texas Southwestern Medical Center
Co-authored papers 22
Xiaowei Zhan
Southwestern Medical Center, University of Texas
Co-authored papers 13
Yunguan Wang
Co-authored papers 10
Gustavo Stolovitzky
IBM T.J. Watson Research Center
Co-authored papers 6
Hao Tang
Guizhou Medical University
Co-authored papers 6
Thea Norman
Bill & Melinda Gates Foundation
Co-authored papers 5
Stephen H Friend
University of Oxford
Co-authored papers 4
James Christopher Bare
Institute for Systems Biology
Co-authored papers 3
Peddinti Gopalacharyulu
Technical Research Centre of Finland
Co-authored papers 3
He Zhang
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Julio Saez-Rodriguez
Institute of Computational Biomedicine, Heidelberg University
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Tero Aittokallio
Institute for Molecular Medicine Finland (FIMM), University of Helsinki
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Stephen Lyon
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Suleiman A Khan
Helsinki Institute for Information Technology (HIIT), Aalto University
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Lara M Mangravite
Children's Hospital Oakland Research Institute
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Xue Zhong
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Chul Ahn
University of Texas Southwestern Medical Center
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Kerstin Bunte
University of Groningen
Co-authored papers 2
Elias Chaibub Neto
University of Wisconsin-Madison.
Co-authored papers 2
Jing Tang
University of Helsinki
Co-authored papers 2
Beibei Chen
University of Texas Southwestern Medical Center
Co-authored papers 2
Yuanfang Guan
University of Michigan ann arbor
Co-authored papers 2
Tapio Pahikkala
University of Turku
Co-authored papers 2
Michael R Kellen
University of Washington
Co-authored papers 2
James C Costello
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Ivan Rusyn
Co-authored papers 2
Allen Dearry
National Institute of Environmental Health Sciences
Co-authored papers 2
Jianjun Zhang
The University of Texas MD Anderson Cancer Center
Co-authored papers 2
John D Minna
University of Texas Southwestern Medical Center at Dallas
Co-authored papers 2
Release 1.2