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Author Details

Nagarjuna Nagaraj
Bruker Daltonics GmbH & Co. KG
2008
36
29
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35014260Accurate and Automated High-Coverage Identification of Chemically Cross-Linked Peptides with MaxLynx.Anal Chem2022
35687021PEAK1 Y635 phosphorylation regulates cell migration through association with Tensin3 and integrins.J Cell Biol2022
36741463Signatures of muscle disuse in spaceflight and bed rest revealed by single muscle fiber proteomics.PNAS Nexus2022
33007132Loss of the psychiatric risk factor SLC6A15 is associated with increased metabolic functions in primary hippocampal neurons.Eur J Neurosci2021
34239088MaxDIA enables library-based and library-free data-independent acquisition proteomics.Nat Biotechnol2021
32133789Identification of signal peptide features for substrate specificity in human Sec62/Sec63-dependent ER protein import.FEBS J2020
31045356First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.Anal Chem2019
31628211SILAC-based quantitative proteomics using mass spectrometry quantifies endoplasmic reticulum stress in whole HeLa cells.Dis Model Mech2019
28614723Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging.Cell Rep2017
28916541A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance.Mol Syst Biol2017
26585961Calsequestrins in skeletal and cardiac muscle from adult Danio rerio.J Muscle Res Cell Motil2016
25568311Phosphorylation of TET proteins is regulated via O-GlcNAcylation by the O-linked N-acetylglucosamine transferase (OGT).J Biol Chem2015
26496610A human interactome in three quantitative dimensions organized by stoichiometries and abundances.Cell2015
26113366Parasite-induced ER stress response in hepatocytes facilitates Plasmodium liver stage infection.EMBO Rep2015
25931565DNA repair. Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links.Science2015
25713560Phosphoproteomics analysis of a clinical Mycobacterium tuberculosis Beijing isolate: expanding the mycobacterial phosphoproteome catalog.Front Microbiol2015
25643707Single muscle fiber proteomics reveals unexpected mitochondrial specialization.EMBO Rep2015
25616865Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways, and transcription factors.Mol Cell Proteomics2015
24487582Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells.Nat Methods2014
25470552Cell-type-resolved quantitative proteomics of murine liver.Cell Metab2014
25466257Global proteome turnover analyses of the Yeasts S. cerevisiae and S. pombe.Cell Rep2014
25056879Time-resolved dissection of early phosphoproteome and ensuing proteome changes in response to TGF-β.Sci Signal2014
24942700Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.Mol Cell Proteomics2014
23436904Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse.Mol Cell Proteomics2013
23611042High performance computational analysis of large-scale proteome data sets to assess incremental contribution to coverage of the human genome.J Proteome Res2013
23438854The coming age of complete, accurate, and ubiquitous proteomes.Mol Cell2013
22021278System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap.Mol Cell Proteomics2012
21126025Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome.J Proteome Res2011
22068331Deep proteome and transcriptome mapping of a human cancer cell line.Mol Syst Biol2011
21743459Large-scale phosphosite quantification in tissues by a spike-in SILAC method.Nat Methods2011
21642640Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.Mol Cell Proteomics2011
20415495Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.J Proteome Res2010
20873877Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.J Proteome Res2010
19377485Universal sample preparation method for proteome analysis.Nat Methods2009
19373234A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics.Nat Protoc2009
18839980Detergent-based but gel-free method allows identification of several hundred membrane proteins in single LC-MS runs.J Proteome Res2008
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Collaborators

Matthias Mann
Max-Planck Institute of Biochemistry
Co-authored papers 25
J??rgen Cox
Max-Planck Institute of Biochemistry
Co-authored papers 16
Richard A Scheltema
Utrecht Institute for Pharmaceutical Sciences, Utrecht University
Co-authored papers 2
Tamar Geiger
Tel Aviv University
Co-authored papers 2
Christoph H Borchers
McGill University
Co-authored papers 1
Albert J R Heck
Utrecht University
Co-authored papers 1
Martin Kircher
Berlin Institute of Health (BIH) at Charite-Universitatsmedizin Berlin
Co-authored papers 1
Daniel S Ziemianowicz
University of Calgary, Arnie Charbonneau Cancer Institute
Co-authored papers 1
Juan D Chavez
Co-authored papers 1
Michael G??tze
and Pharmacy, Freie Universitat Berlin
Co-authored papers 1
Carla Schmidt
Johannes Gutenberg University Mainz
Co-authored papers 1
Tobias C Walther
Harvard T. H. Chan School of Public Health
Co-authored papers 1
Philip C Andrews
Sydney Children's Hospital, University of New South Wales
Co-authored papers 1
Karl Mechtler
IMP-Institute of Molecular Pathology
Co-authored papers 1
Marta Vilaseca
Network Center for Biomedical Research in Neurodegenerative Diseases (CIBERNED)
Co-authored papers 1
Alexander Leitner
ETH Zurich
Co-authored papers 1
Robert L Moritz
Institute for Systems Biology
Co-authored papers 1
Andrea Sinz
Center for Structural Mass Spectrometry, Martin Luther University Halle-Wittenberg
Co-authored papers 1
Petr Nov??k
Institute of Microbiology of the CAS
Co-authored papers 1
Ana Velic
Interfaculty Institute for Cell Biology.
Co-authored papers 1
Aiping Lu
Co-authored papers 1
Oliver F Lange
Center for Integrated Protein Science, Technische Universitat Munchen
Co-authored papers 1
Caroline Kampf
Uppsala University
Co-authored papers 1
Nir Kalisman
Institute of Life Sciences, The Hebrew University
Co-authored papers 1
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 1
Michael J MacCoss
University of Washington
Co-authored papers 1
James E Bruce
Co-authored papers 1
Yi Shi
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Michael R Hoopmann
Institute for Systems Biology
Co-authored papers 1
Lan Huang
University of California Irvine
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Release 1.2