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Author Details

Sofia M C Robb
Stowers Institute for Medical Research
2002
19
14
PMIDPaper TitleJournal TitlePublished Year
36930644An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.Cell Rep2023
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
34318308Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms.Development2021
33020276Genomic diversity generated by a transposable element burst in a rice recombinant inbred population.Proc Natl Acad Sci U S A2020
32883834Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates.Science2020
29100657Cellular, ultrastructural and molecular analyses of epidermal cell development in the planarian Schmidtea mediterranea.Dev Biol2018
30224652Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.Nat Genet2018
29674745Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.Nat Genet2018
29674435Phylogenetic and Phylogenomic Definition of <i>Rhizopus</i> Species.G3 (Bethesda)2018
29358652The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.Nat Genet2018
28072387Embryonic origin of adult stem cells required for tissue homeostasis and regeneration.Elife2017
29158416Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.Proc Natl Acad Sci U S A2017
26138588SmedGD 2.0: The Schmidtea mediterranea genome database.Genesis2015
24512706Histone modifications and regeneration in the planarian Schmidtea mediterranea.Curr Top Dev Biol2014
23576519The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.G3 (Bethesda)2013
17881371SmedGD: the Schmidtea mediterranea genome database.Nucleic Acids Res2008
18025269MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.Genome Res2008
11948917Identification of immunological reagents for use in the study of freshwater planarians by means of whole-mount immunofluorescence and confocal microscopy.Genesis2002
12421706The Schmidtea mediterranea database as a molecular resource for studying platyhelminthes, stem cells and regeneration.Development2002
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Collaborators

Mark Yandell
University of Utah
Co-authored papers 5
Carson Holt
University of Utah
Co-authored papers 5
Jason E Stajich
University of California-Riverside
Co-authored papers 4
Carl Baker
University of Washington School of Medicine
Co-authored papers 3
Evan E Eichler
University of Washington
Co-authored papers 3
Julie A McMurry
University of Colorado - Anschutz Medical Campus
Co-authored papers 1
Melissa A Haendel
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 1
Anita R Caron
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Seth Carbon
Lawrence Berkeley National Laboratory
Co-authored papers 1
William R Hogan
College of Medicine, University of Florida
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Sabrina Toro
University of Colorado Anschutz Medical Campus
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Barry Moore
Utah Center for Genetic Discovery, University of Utah
Co-authored papers 1
Clare Pilgrim
University of Cambridge
Co-authored papers 1
James P Balhoff
Renaissance Computing Institute, University of North Carolina
Co-authored papers 1
HyeongSik Kim
Robert Bosch LLC
Co-authored papers 1
Nomi L Harris
Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
Co-authored papers 1
Nicolas Matentzoglu
Co-authored papers 1
James A Overton
Knocean Inc.
Co-authored papers 1
Melissa A Haendel
Co-authored papers 1
Ian Korf
University of California davis
Co-authored papers 1
Nicole Vasilevsky
Critical Path Institute
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Raymund Stefancsik
European Bioinformatics Institute
Co-authored papers 1
Brandi L Cantarel
University of Texas Southwestern Medical Center
Co-authored papers 1
Rebecca C Jackson
Bend Informatics LLC
Co-authored papers 1
Martin Larralde
Ecole Normale Superieure Paris-Saclay
Co-authored papers 1
Damien Goutte-Gattat
University of Cambridge
Co-authored papers 1
Christopher J Mungall
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 1
Olivier Fedrigo
The Rockefeller University
Co-authored papers 1
Shawn Zheng Kai Tan
European Bioinformatics Institute (EMBL-EBI)
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Ramona L Walls
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Release 1.2