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Author Details

Simon Heath
Barcelona Institute of Science and Technology (BIST)
1995
158
73
PMIDPaper TitleJournal TitlePublished Year
36726731cvlr: finding heterogeneously methylated genomic regions using ONT reads.Bioinform Adv2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
37251933Evaluation of circulating tumor DNA by electropherogram analysis and methylome profiling in high-risk neuroblastomas.Front Oncol2023
36611239Liquidhope: methylome and genomic profiling from very limited quantities of plasma-derived DNA.Brief Bioinform2023
36726731cvlr: finding heterogeneously methylated genomic regions using ONT reads.Bioinform Adv2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37503119The ENCODE Uniform Analysis Pipelines.Res Sq2023
37251933Evaluation of circulating tumor DNA by electropherogram analysis and methylome profiling in high-risk neuroblastomas.Front Oncol2023
37066421The ENCODE Uniform Analysis Pipelines.bioRxiv2023
36611239Liquidhope: methylome and genomic profiling from very limited quantities of plasma-derived DNA.Brief Bioinform2023
34718417DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.Bioinformatics2022
36202811A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome.Nat Commun2022
34718417DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.Bioinformatics2022
36202811A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome.Nat Commun2022
34050148Impact of DNA methylation on 3D genome structure.Nat Commun2021
35544166Lung microbiome composition and bronchial epithelial gene expression in patients with COPD versus healthy individuals: a bacterial 16S rRNA gene sequencing and host transcriptomic analysis.Lancet Microbe2021
34050148Impact of DNA methylation on 3D genome structure.Nat Commun2021
34145303Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes.Sci Rep2021
35544166Lung microbiome composition and bronchial epithelial gene expression in patients with COPD versus healthy individuals: a bacterial 16S rRNA gene sequencing and host transcriptomic analysis.Lancet Microbe2021
34145303Gender specific airway gene expression in COPD sub-phenotypes supports a role of mitochondria and of different types of leukocytes.Sci Rep2021
31506971Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma.Allergy2020
31506971Blood eosinophil count and airway epithelial transcriptome relationships in COPD versus asthma.Allergy2020
30385411A FBN1 3'UTR mutation variant is associated with endoplasmic reticulum stress in aortic aneurysm in Marfan syndrome.Biochim Biophys Acta Mol Basis Dis2019
30512195Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture.Biotechnol Bioeng2019
30385411A FBN1 3'UTR mutation variant is associated with endoplasmic reticulum stress in aortic aneurysm in Marfan syndrome.Biochim Biophys Acta Mol Basis Dis2019
30137223gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.Bioinformatics2019
30565652Differential expression of long non-coding RNAs are related to proliferation and histological diversity in follicular lymphomas.Br J Haematol2019
31138618Systems analysis reveals complex biological processes during virus infection fate decisions.Genome Res2019
31504766Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning.Nucleic Acids Res2019
31130969Linking Cell Dynamics With Gene Coexpression Networks to Characterize Key Events in Chronic Virus Infections.Front Immunol2019
30673601Chromatin-Based Classification of Genetically Heterogeneous AMLs into Two Distinct Subtypes with Diverse Stemness Phenotypes.Cell Rep2019
31337434Whole-genome DNA hyper-methylation in iPSC-derived dopaminergic neurons from Parkinson's disease patients.Clin Epigenetics2019
31196176PD-1 signaling affects cristae morphology and leads to mitochondrial dysfunction in human CD8<sup>+</sup> T lymphocytes.J Immunother Cancer2019
30137223gemBS: high throughput processing for DNA methylation data from bisulfite sequencing.Bioinformatics2019
31196176PD-1 signaling affects cristae morphology and leads to mitochondrial dysfunction in human CD8<sup>+</sup> T lymphocytes.J Immunother Cancer2019
31337434Whole-genome DNA hyper-methylation in iPSC-derived dopaminergic neurons from Parkinson's disease patients.Clin Epigenetics2019
31504766Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning.Nucleic Acids Res2019
31130969Linking Cell Dynamics With Gene Coexpression Networks to Characterize Key Events in Chronic Virus Infections.Front Immunol2019
31138618Systems analysis reveals complex biological processes during virus infection fate decisions.Genome Res2019
30673601Chromatin-Based Classification of Genetically Heterogeneous AMLs into Two Distinct Subtypes with Diverse Stemness Phenotypes.Cell Rep2019
30512195Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture.Biotechnol Bioeng2019
30565652Differential expression of long non-coding RNAs are related to proliferation and histological diversity in follicular lymphomas.Br J Haematol2019
29785028The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia.Nat Med2018
30220521Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.Cell Stem Cell2018
29876014Multi-omics profiling reveals a distinctive epigenome signature for high-risk acute promyelocytic leukemia.Oncotarget2018
29876013Combined HAT/EZH2 modulation leads to cancer-selective cell death.Oncotarget2018
30526885Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.Cell Stem Cell2018
30184510Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils.Cell Rep2018
29654251Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle.Sci Rep2018
29785028The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia.Nat Med2018
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Collaborators

Ivo Gut
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Mark Lathrop
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Marta Gut
Universitat de Barcelona (UB)
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Diana Zelenika
Co-authored papers 28
Pilar Galan
Co-authored papers 14
G M Lathrop
Co-authored papers 14
Martin Farrall
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Hendrik G Stunnenberg
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Gon??alo R Abecasis
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H-Erich Wichmann
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John F Peden
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Paul Flicek
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Hugh Watkins
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Marc Dabad
Universitat de Barcelona (UB)
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Anne U Jackson
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Robert Clarke
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Laura Clarke
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Lausanne University Hospital and University of Lausanne
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Manuela Uda
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Ruth J F Loos
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Nicholas J Wareham
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Elias Campo
Institute for Biomedical Research August Pi I Sunyer
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Francis S Collins
University of Michigan ann arbor
Co-authored papers 9
Tim D Spector
King's College London
Co-authored papers 9
Panos Deloukas
William Harvey Research Institute, Queen Mary University of London
Co-authored papers 9
Jian'an Luan
Co-authored papers 9
Anders Hamsten
Co-authored papers 9
Release 1.2