|
| 36093336 | Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. | PeerJ | 2022 |
| 35630311 | Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing <i>Escherichia coli</i> O145:H28. | Microorganisms | 2022 |
| 35561186 | EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts. | Bioinformatics | 2022 |
| 36303775 | Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale. | Front Bioinform | 2022 |
| 36130255 | Precise Genomic Riboregulator Control of Metabolic Flux in Microbial Systems. | ACS Synth Biol | 2022 |
| 36380755 | Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance. | bioRxiv | 2022 |
| 32777813 | A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays. | Bioinformatics | 2021 |
| 34851164 | Discovery of an Antarctic Ascidian-Associated Uncultivated <i>Verrucomicrobia</i> with Antimelanoma Palmerolide Biosynthetic Potential. | mSphere | 2021 |
| 35004620 | Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian. | Front Chem | 2021 |
| 32350400 | The National Microbiome Data Collaborative: enabling microbiome science. | Nat Rev Microbiol | 2020 |
| 32015354 | Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life. | Sci Rep | 2020 |
| 33374112 | The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice. | Life (Basel) | 2020 |
| 32498449 | Uncovering the Core Microbiome and Distribution of Palmerolide in <i>Synoicum adareanum</i> Across the Anvers Island Archipelago<i>,</i> Antarctica. | Mar Drugs | 2020 |
| 30268944 | Diagnostic targETEd seQuencing adjudicaTion (DETEQT): Algorithms for Adjudicating Targeted Infectious Disease Next-Generation Sequencing Panels. | J Mol Diagn | 2019 |
| 35506046 | Investigating intestinal permeability and gut microbiota roles in acute coronary syndrome patients. | Hum Microb J | 2019 |
| 31608125 | Advances and Challenges in Metatranscriptomic Analysis. | Front Genet | 2019 |
| 29348328 | Correction for Johnson et al., "Complete Genome Sequences for 35 Biothreat Assay-Relevant <i>Bacillus</i> Species". | Genome Announc | 2018 |
| 29959256 | "Candidatus Nitrosotenuis aquarius," an Ammonia-Oxidizing Archaeon from a Freshwater Aquarium Biofilter. | Appl Environ Microbiol | 2018 |
| 27860341 | Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater. | Microbiologyopen | 2017 |
| 34595290 | Brief Protocol for EDGE Bioinformatics: Analyzing Microbial and Metagenomic NGS Data. | Bio Protoc | 2017 |
| 28473393 | High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: <i>Gordonia</i> sp., <i>Paenibacillus</i> sp., <i>Variovorax</i> sp., and <i>Vogesella</i> sp. | Genome Announc | 2017 |
| 28545131 | Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach. | PLoS One | 2017 |
| 27899609 | Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform. | Nucleic Acids Res | 2017 |
| 26928302 | ADEPT, a dynamic next generation sequencing data error-detection program with trimming. | BMC Bioinformatics | 2016 |
| 26744368 | Draft Genomes for Eight Burkholderia mallei Isolates from Turkey. | Genome Announc | 2016 |
| 25416762 | Adaptation genomics of a small-colony variant in a Pseudomonas chlororaphis 30-84 biofilm. | Appl Environ Microbiol | 2015 |
| 26305456 | CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA. | PLoS One | 2015 |
| 26543105 | First Complete Genome Sequence of Felis catus Gammaherpesvirus 1. | Genome Announc | 2015 |
| 26316638 | Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent. | Genome Announc | 2015 |
| 26316637 | Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir. | Genome Announc | 2015 |
| 26067952 | Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species. | Genome Announc | 2015 |
| 25931591 | Complete genome sequences for 35 biothreat assay-relevant bacillus species. | Genome Announc | 2015 |
| 25931590 | Thirty-Two Complete Genome Assemblies of Nine Yersinia Species, Including Y. pestis, Y. pseudotuberculosis, and Y. enterocolitica. | Genome Announc | 2015 |
| 25973144 | Under-detection of endospore-forming Firmicutes in metagenomic data. | Comput Struct Biotechnol J | 2015 |
| 25792053 | Draft Genome Sequence of Thauera sp. Strain SWB20, Isolated from a Singapore Wastewater Treatment Facility Using Gel Microdroplets. | Genome Announc | 2015 |
| 24454771 | Recruiting human microbiome shotgun data to site-specific reference genomes. | PLoS One | 2014 |
| 25414490 | Whole-genome assemblies of 56 burkholderia species. | Genome Announc | 2014 |
| 25408143 | Rapid evaluation and quality control of next generation sequencing data with FaQCs. | BMC Bioinformatics | 2014 |
| 25291763 | Draft Genome Assembly of Klebsiella pneumoniae Type Strain ATCC 13883. | Genome Announc | 2014 |
| 25237030 | Complete Genome Assembly of a Quality Control Reference Isolate, Moraxella catarrhalis Strain ATCC 25240. | Genome Announc | 2014 |
| 25237025 | Draft Genome Assembly of Bordetella bronchiseptica ATCC 10580, a Historical Canine Clinical Isolate. | Genome Announc | 2014 |
| 25237024 | Whole-genome sequences of 24 Brucella strains. | Genome Announc | 2014 |
| 25258272 | Draft Genome Assembly of Ralstonia pickettii Type Strain K-288 (ATCC 27853). | Genome Announc | 2014 |
| 25278527 | Genome Assembly of Methicillin-Resistant Quality Control Strain Staphylococcus aureus CDC73-57501 (ATCC 29247). | Genome Announc | 2014 |
| 25301645 | Twenty Whole-Genome Bacillus sp. Assemblies. | Genome Announc | 2014 |
| 25270300 | Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs. | Sci Rep | 2014 |
| 25342682 | Complete Genome Sequence of Type Strain Pasteurella multocida subsp. multocida ATCC 43137. | Genome Announc | 2014 |
| 25342679 | Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains. | Genome Announc | 2014 |
| 25359907 | Genome Assembly of Shigella flexneri ATCC 12022, a Quality Control Reference Strain. | Genome Announc | 2014 |
| 23192551 | Viral genome analysis and knowledge management. | Methods Mol Biol | 2013 |