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Author Details

Lukasz Jaroszewski
University of California Riverside School of Medicine
1995
180
40
PMIDPaper TitleJournal TitlePublished Year
36933758Gender differences in smoking-induced changes in the tumor immune microenvironment.Arch Biochem Biophys2023
37562586Unusual structural and functional features of TpLRR/BspA-like LRR proteins.J Struct Biol2023
37054986US National Institutes of Health Prioritization of SARS-CoV-2 Variants.Emerg Infect Dis2023
34553433Novel putative polyethylene terephthalate (PET) plastic degrading enzymes from the environmental metagenome.Proteins2022
35435721A Genomic Island of Vibrio cholerae Encodes a Three-Component Cytotoxin with Monomer and Protomer Forms Structurally Similar to Alpha-Pore-Forming Toxins.J Bacteriol2022
35762711What the protein data bank tells us about the evolutionary conservation of protein conformational diversity.Protein Sci2022
35719386Increased Frequency of Indels in Hypervariable Regions of SARS-CoV-2 Proteins-A Possible Signature of Adaptive Selection.Front Genet2022
35860230Resistin Concentration in Early Sepsis and All-Cause Mortality at a Safety-Net Hospital in Riverside County.J Inflamm Res2022
36560718ViralVar: A Web Tool for Multilevel Visualization of SARS-CoV-2 Genomes.Viruses2022
33972023ModFlex: Towards Function Focused Protein Modeling.J Mol Biol2021
33656416Identification and phylogenetic analysis of RNA binding domain abundant in apicomplexans or RAP proteins.Microb Genom2021
34237054The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.PLoS Comput Biol2021
32511376The crystal structure of nsp10-nsp16 heterodimer from SARS-CoV-2 in complex with S-adenosylmethionine.bioRxiv2020
31811683Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment.Protein Sci2020
32817947The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.bioRxiv2020
32470119Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence.Bioinformatics2020
32469061FATCAT 2.0: towards a better understanding of the structural diversity of proteins.Nucleic Acids Res2020
32163442Difference contact maps: From what to why in the analysis of the conformational flexibility of proteins.PLoS One2020
30407596Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets.Nucleic Acids Res2019
31306512Structures of single-layer β-sheet proteins evolved from β-hairpin repeats.Protein Sci2019
27050129UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex.Acta Crystallogr D Struct Biol2016
26515826Protael: protein data visualization library for the web.Bioinformatics2016
26615193PDBFlex: exploring flexibility in protein structures.Nucleic Acids Res2016
27334472Revealing aperiodic aspects of solenoid proteins from sequence information.Bioinformatics2016
27385826Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination.Proc Natl Acad Sci U S A2016
27154589NMR in structural genomics to increase structural coverage of the protein universe: Delivered by Prof. Kurt Wüthrich on 7 July 2013 at the 38th FEBS Congress in St. Petersburg, Russia.FEBS J2016
27062925A Distinct Type of Pilus from the Human Microbiome.Cell2016
25701568AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain-domain interaction prediction.Bioinformatics2015
26374125Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.mBio2015
26635892PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB.Source Code Biol Med2015
23852666Crystal structure of a member of a novel family of dioxygenases (PF10014) reveals a conserved cupin fold and active site.Proteins2014
25465128Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.Structure2014
25286848Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications.Acta Crystallogr D Biol Crystallogr2014
24831546AIDA: ab initio domain assembly server.Nucleic Acids Res2014
24888348Molecular characterization of novel pyridoxal-5'-phosphate-dependent enzymes from the human microbiome.Protein Sci2014
24957597PubServer: literature searches by homology.Nucleic Acids Res2014
24598732Improving the chances of successful protein structure determination with a random forest classifier.Acta Crystallogr D Biol Crystallogr2014
24051416Structures of a bifunctional cell wall hydrolase CwlT containing a novel bacterial lysozyme and an NlpC/P60 DL-endopeptidase.J Mol Biol2014
24130308FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking.Bioinformatics2014
24174223Crystal structure of a putative quorum sensing-regulated protein (PA3611) from the Pseudomonas-specific DUF4146 family.Proteins2014
24004689Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.BMC Bioinformatics2013
22211578Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization.Mol Microbiol2012
22984442Structure of a novel winged-helix like domain from human NFRKB protein.PLoS One2012
22844465Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes.PLoS One2012
21247902Crystal structure of the human N-Myc downstream-regulated gene 2 protein provides insight into its role as a tumor suppressor.J Biol Chem2011
21799766Structural analysis of papain-like NlpC/P60 superfamily enzymes with a circularly permuted topology reveals potential lipid binding sites.PLoS One2011
21799754Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.PLoS One2011
21715387FFAS server: novel features and applications.Nucleic Acids Res2011
21671455Internal organization of large protein families: relationship between the sequence, structure, and function-based clustering.Proteins2011
19913036Bacterial pleckstrin homology domains: a prokaryotic origin for the PH domain.J Mol Biol2010
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Collaborators

Adam Godzik
University of California Riverside
Co-authored papers 169
Ian A Wilson
The Scripps Research Institute, USA The Skaggs Institute for Chemical Biology
Co-authored papers 113
Ashley M Deacon
Accelero Biostructures Inc., USA XPose Therapeutics Inc.
Co-authored papers 110
Scott A Lesley
Merck & Co., Inc.
Co-authored papers 110
Marc-Andr?? Elsliger
Joint Center for Structural Genomics
Co-authored papers 107
Mitchell D Miller
Rice University
Co-authored papers 100
Heath E Klock
Merck & Co., Inc.
Co-authored papers 97
John Wooley
University of California
Co-authored papers 95
Qingping Xu
Argonne National Laboratory
Co-authored papers 91
Keith O Hodgson
Stanford University
Co-authored papers 90
Henry van den Bedem
University of California San Francisco
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Hsiu-Ju Chiu
Joint Center for Structural Genomics
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Daniel McMullan
Genomics Institute of the Novartis Research Foundation
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Andrew T Morse
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Polat Abdubek
Regeneron Pharmaceuticals, Inc.
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Slawomir K Grzechnik
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Ron Reyes
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Mark W Knuth
Joint Center for Structural Genomics
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Edward Nigoghossian
Genomics Institute of the Novartis Research Foundation
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Gye Won Han
Bridge Institute, University of Southern California
Co-authored papers 58
Herbert L Axelrod
Joint Center for Structural Genomics
Co-authored papers 56
Sanjay Krishna
Institute of Science, Banaras Hindu University
Co-authored papers 53
Christopher L Rife
The Joint Center for Structural Genomics, Stanford University
Co-authored papers 50
Raymond C Stevens
iHuman Institute, ShanghaiTech University
Co-authored papers 48
Peter Kuhn
University of Tubingen
Co-authored papers 47
Kevin K Jin
Cardiovascular Institute, Stanford University School of Medicine
Co-authored papers 47
Lian Duan
Brown University
Co-authored papers 46
Thomas Clayton
Celgene/Bristol-Myers Squibb Corporation
Co-authored papers 45
Julie Feuerhelm
Co-authored papers 45
Linda Okach
Co-authored papers 45
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