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Author Details

Guillaume J Filion
University of Toronto Scarborough
2004
39
22
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36028473Causality in transcription and genome folding: Insights from X inactivation.Bioessays2022
35490134Chromatin and viral integration in immunity: The challenge of silencing non-self genes.Trends Immunol2022
34108480Chromosome compartments on the inactive X guide TAD formation independently of transcription during X-reactivation.Nat Commun2021
34711809Author Correction: Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.Nat Commun2021
32670351Calibrating Seed-Based Heuristics to Map Short Reads With Sesame.Front Genet2020
32597987The chromatin landscape at the HIV-1 provirus integration site determines viral expression.Nucleic Acids Res2020
30969963An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape.PLoS Genet2019
31492853Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.Nat Commun2019
31092938Transcription factors and 3D genome conformation in cell-fate decisions.Nature2019
29343578A New Quinoline BRD4 Inhibitor Targets a Distinct Latent HIV-1 Reservoir for Reactivation from Other "Shock" Drugs.J Virol2018
29851299Using Barcoded HIV Ensembles (B-HIVE) for Single Provirus Transcriptomics.Curr Protoc Mol Biol2018
29712907Theoretical principles of transcription factor traffic on folded chromatin.Nat Commun2018
29394371OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes.Nucleic Acids Res2018
29335546Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.Nat Genet2018
27870832Position effects influence HIV latency reversal.Nat Struct Mol Biol2017
28420691Clustering of <i>Drosophila</i> housekeeping promoters facilitates their expression.Genome Res2017
29048533Parallel sequencing lives, or what makes large sequencing projects successful.Gigascience2017
28723903Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.PLoS Comput Biol2017
28803780Methylation of DNA Ligase 1 by G9a/GLP Recruits UHRF1 to Replicating DNA and Regulates DNA Methylation.Mol Cell2017
27288492Zerone: a ChIP-seq discretizer for multiple replicates with built-in quality control.Bioinformatics2016
25722854The signed Kolmogorov-Smirnov test: why it should not be used.Gigascience2015
263617443D genome structure. Organization of the nucleus in space and time.FEBS Lett2015
26606303Machine Learning: How Much Does It Tell about Protein Folding Rates?PLoS One2015
25638815Starcode: sequence clustering based on all-pairs search.Bioinformatics2015
25274727Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation.Genes Dev2014
23438860A network model of the molecular organization of chromatin in Drosophila.Mol Cell2013
22156748The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe.Nucleus2012
21447292[The five colours of Drosophila chromatin].Med Sci (Paris)2011
20007327Bayesian network analysis of targeting interactions in chromatin.Genome Res2010
20888037Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.Cell2010
20037608Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells.Nat Genet2010
19448668The human protein kinase HIPK2 phosphorylates and downregulates the methyl-binding transcription factor ZBTB4.Oncogene2009
18063799Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic.Science2007
16354688A family of human zinc finger proteins that bind methylated DNA and repress transcription.Mol Cell Biol2006
16797234Transmission and immunity: the importance of heterogeneity in the fight against malaria.Trends Parasitol2006
16914111Using reverse electrophoretic mobility shift assay to measure and compare protein-DNA binding affinities.Anal Biochem2006
16627238[Epigenetics and cancer].Bull Cancer2006
16230345The human enhancer blocker CTC-binding factor interacts with the transcription factor Kaiso.J Biol Chem2005
14770354[Proteins binding to methylated DNA: interpreters of the epigenetic code].Med Sci (Paris)2004
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Collaborators

Bas van Steensel
Oncode Institute, Netherlands Cancer Institute
Co-authored papers 6
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 5
Joke G van Bemmel
Institut Curie, PSL Research University, CNRS UMR3215, INSERM U934
Co-authored papers 3
Ulrich Braunschweig
University of Toronto
Co-authored papers 2
Jochen Hecht
The Barcelona Institute of Science and Technology
Co-authored papers 1
Harmen J Bussemaker
Co-authored papers 1
Fred van Leeuwen
Netherlands Cancer Institute, University of Amsterdam
Co-authored papers 1
Tibor van Welsem
Netherlands Cancer Institute
Co-authored papers 1
Menzies Chen
University of California
Co-authored papers 1
Lucas D Ward
Co-authored papers 1
Ines J de Castro
MRC London Institute for Medical Sciences
Co-authored papers 1
Edith Heard
Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934
Co-authored papers 1
Tokameh Mahmoudi
Erasmus University Medical Center
Co-authored papers 1
Adrian Francis Stewart
Center for Molecular and Cellular Bioengineering, Technische Universitat Dresden
Co-authored papers 1
Maud de Dieuleveult
ULB-Cancer Research Centre (U-CRC), Universite Libre De Bruxelles
Co-authored papers 1
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 1
Karl Ekwall
Karolinska Institute
Co-authored papers 1
Release 1.2