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Author Details

Kerwyn Casey Huang
Stanford University, Stanford University School of Medicine
2003
164
46
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36865163Mechanism of outer membrane destabilization by global reduction of protein content.bioRxiv2023
37808827Prolonged delays in human microbiota transmission after a controlled antibiotic perturbation.bioRxiv2023
37714857Mechanism of outer membrane destabilization by global reduction of protein content.Nat Commun2023
37546722Metabolomic rearrangement controls the intrinsic microbial response to temperature changes.bioRxiv2023
37693407A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions.bioRxiv2023
37055390Previously uncharacterized rectangular bacterial structures in the dolphin mouth.Nat Commun2023
37349583Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron.Nat Chem Biol2023
37119759Physiological and regulatory convergence between osmotic and nutrient stress responses in microbes.Curr Opin Cell Biol2023
36944617A symbiotic physical niche in Drosophila melanogaster regulates stable association of a multi-species gut microbiota.Nat Commun2023
37100773Modulation of antibiotic effects on microbial communities by resource competition.Nat Commun2023
37165188Profiling the human intestinal environment under physiological conditions.Nature2023
37165176Human metabolome variation along the upper intestinal tract.Nat Metab2023
36608574Within-host evolution of the gut microbiome.Curr Opin Microbiol2023
36711771Assembly of gut-derived bacterial communities follows "early-bird" resource utilization dynamics.bioRxiv2023
36603582The impact of iron and heme availability on the healthy human gut microbiome in vivo and in vitro.Cell Chem Biol2023
36796333What is the key challenge in engineering microbiomes?Cell Syst2023
34732874Physical properties of the bacterial outer membrane.Nat Rev Microbiol2022
35404785Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas.Elife2022
35534014The Effects of Temperature on Cellular Physiology.Annu Rev Biophys2022
36478858Cellular memory of rapid growth is sensitive to nutrient depletion during starvation.Front Microbiol2022
36527020Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron.BMC Biol2022
36070752Design, construction, and in vivo augmentation of a complex gut microbiome.Cell2022
36069446Fatty Acid Synthesis Knockdown Promotes Biofilm Wrinkling and Inhibits Sporulation in Bacillus subtilis.mBio2022
36067229M-TUBE enables large-volume bacterial gene delivery using a high-throughput microfluidic electroporation platform.PLoS Biol2022
36382191Multiple conserved states characterize the twist landscape of the bacterial actin homolog MreB.Comput Struct Biotechnol J2022
36191183Feedback linking cell envelope stiffness, curvature, and synthesis enables robust rod-shaped bacterial growth.Proc Natl Acad Sci U S A2022
35039514Extracting phylogenetic dimensions of coevolution reveals hidden functional signals.Sci Rep2022
35243217Bacterial respiration during stationary phase induces intracellular damage that leads to delayed regrowth.iScience2022
35266814The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut.mBio2022
35051349Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota.Cell Host Microbe2022
35340431Optimization of the 16S rRNA sequencing analysis pipeline for studying <i>in vitro</i> communities of gut commensals.iScience2022
34021295Rapid ordering of barcoded transposon insertion libraries of anaerobic bacteria.Nat Protoc2021
33657378Functional genetics of human gut commensal Bacteroides thetaiotaomicron reveals metabolic requirements for growth across environments.Cell Rep2021
33594973Three-dimensional biofilm colony growth supports a mutualism involving matrix and nutrient sharing.Elife2021
33785742Precise regulation of the relative rates of surface area and volume synthesis in bacterial cells growing in dynamic environments.Nat Commun2021
33912815Effects of fixation on bacterial cellular dimensions and integrity.iScience2021
34473943Quantifying rapid bacterial evolution and transmission within the mouse intestine.Cell Host Microbe2021
34489908Hyperosmotic Shock Transiently Accelerates Constriction Rate in <i>Escherichia coli</i>.Front Microbiol2021
34634934Morphological and Transcriptional Responses to CRISPRi Knockdown of Essential Genes in Escherichia coli.mBio2021
34724813Bacterial Filamentation Drives Colony Chirality.mBio2021
34019789Chemical-genetic interrogation of RNA polymerase mutants reveals structure-function relationships and physiological tradeoffs.Mol Cell2021
34326523Entropy-driven translocation of disordered proteins through the Gram-positive bacterial cell wall.Nat Microbiol2021
34117124Starvation induces shrinkage of the bacterial cytoplasm.Proc Natl Acad Sci U S A2021
32322050Colons or semi-colons: punctuating the regional variation of intestinal microbial-immune interactions.Nat Rev Gastroenterol Hepatol2020
32059765Biosurfactant-Mediated Membrane Depolarization Maintains Viability during Oxygen Depletion in Bacillus subtilis.Curr Biol2020
31995029Bacterial interspecies interactions modulate pH-mediated antibiotic tolerance.Elife2020
31959968Klebsiella michiganensis transmission enhances resistance to Enterobacteriaceae gut invasion by nutrition competition.Nat Microbiol2020
31986129Bellymount enables longitudinal, intravital imaging of abdominal organs and the gut microbiota in adult Drosophila.PLoS Biol2020
33031771Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.Cell Host Microbe2020
33082255Environmental and Physiological Factors Affecting High-Throughput Measurements of Bacterial Growth.mBio2020
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Collaborators

Justin L Sonnenburg
Stanford University
Co-authored papers 12
Anthony L Shiver
Stanford University
Co-authored papers 10
Zemer Gitai
Princeton University
Co-authored papers 8
Joshua E Elias
Addenbrooke's Hospital, University of Cambridge
Co-authored papers 7
Norma Neff
Stanford University
Co-authored papers 7
Carol A Gross
University of California san francisco
Co-authored papers 7
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 5
Jason M Peters
School of Pharmacy, University of Wisconsin-Madison
Co-authored papers 5
Michael S VanNieuwenhze
Co-authored papers 3
Ami S Bhatt
Stanford University
Co-authored papers 3
Michael A Fischbach
Stanford University
Co-authored papers 3
Daniel B Kearns
Indiana University
Co-authored papers 2
Stephen R Quake
Stanford University
Co-authored papers 2
Oliver Fiehn
University of California davis
Co-authored papers 2
Mark Goulian
University of Pennsylvania
Co-authored papers 2
Hendrik Osadnik
University of California San Francisco
Co-authored papers 2
Hannes Braberg
University of California San Francisco
Co-authored papers 1
Jose G Vilches-Moure
Co-authored papers 1
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 1
Evan M Masutani
University of California
Co-authored papers 1
Robert Landick
University of Wisconsin-Madison
Co-authored papers 1
Anthony J O'Donoghue
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 1
Anirvan M Sengupta
Center for Computational Neuroscience, Flatiron Institute
Co-authored papers 1
Christopher J Petzold
Joint BioEnergy Institute
Co-authored papers 1
Hironori Niki
Co-authored papers 1
Peter I Wu
Texas A&M University, College Station
Co-authored papers 1
Carlos Bustamante
University of California berkeley
Co-authored papers 1
Trung Pham
Stanford University
Co-authored papers 1
James C Hu
Texas A&M University and Texas Agrilife Research, College Station
Co-authored papers 1
Michael T Laub
Massachusetts Institute of Technology
Co-authored papers 1
Release 1.2