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Author Details

Daifeng Wang
University of Wisconsin-Madison
2012
51
16
PMIDPaper TitleJournal TitlePublished Year
37961577NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation.bioRxiv2024
37961577NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation.bioRxiv2024
36635622Computational approaches to address data challenges in intellectual and developmental disabilities research.J Neurodev Disord2023
37904203DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction.Genome Med2023
36648426Predicting brain-regional gene regulatory networks from multi-omics for Alzheimer's disease phenotypes and Covid-19 severity.Hum Mol Genet2023
36635622Computational approaches to address data challenges in intellectual and developmental disabilities research.J Neurodev Disord2023
37434182CMOT: Cross-Modality Optimal Transport for multimodal inference.Genome Biol2023
37365192Elevated levels of FMRP-target MAP1B impair human and mouse neuronal development and mouse social behaviors via autophagy pathway.Nat Commun2023
37292613Age-maintained human neurons demonstrate a developmental loss of intrinsic neurite growth ability.bioRxiv2023
37904203DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction.Genome Med2023
37292613Age-maintained human neurons demonstrate a developmental loss of intrinsic neurite growth ability.bioRxiv2023
37434182CMOT: Cross-Modality Optimal Transport for multimodal inference.Genome Biol2023
37365192Elevated levels of FMRP-target MAP1B impair human and mouse neuronal development and mouse social behaviors via autophagy pathway.Nat Commun2023
36648426Predicting brain-regional gene regulatory networks from multi-omics for Alzheimer's disease phenotypes and Covid-19 severity.Hum Mol Genet2023
34953016Chemically induced senescence in human stem cell-derived neurons promotes phenotypic presentation of neurodegeneration.Aging Cell2022
35623352Altered patterning of trisomy 21 interneuron progenitors.Stem Cell Reports2022
35549943Sustained correction of hippocampal neurogenic and cognitive deficits after a brief treatment by Nutlin-3 in a mouse model of fragile X syndrome.BMC Med2022
36323788Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD.Nature2022
36424644Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex.Genome Med2022
35849618Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer's disease.PLoS Comput Biol2022
34953465An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.Brief Bioinform2022
34953016Chemically induced senescence in human stem cell-derived neurons promotes phenotypic presentation of neurodegeneration.Aging Cell2022
35549943Sustained correction of hippocampal neurogenic and cognitive deficits after a brief treatment by Nutlin-3 in a mouse model of fragile X syndrome.BMC Med2022
35623352Altered patterning of trisomy 21 interneuron progenitors.Stem Cell Reports2022
35849618Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer's disease.PLoS Comput Biol2022
36424644Illuminating links between cis-regulators and trans-acting variants in the human prefrontal cortex.Genome Med2022
36323788Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD.Nature2022
34953465An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease.Brief Bioinform2022
34189529Predicting gene regulatory networks from multi-omics to link genetic risk variants and neuroimmunology to Alzheimer's disease phenotypes.bioRxiv2021
33539344Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder.PLoS Genet2021
34044854scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks.Genome Med2021
34189529Predicting gene regulatory networks from multi-omics to link genetic risk variants and neuroimmunology to Alzheimer's disease phenotypes.bioRxiv2021
33863995FXR1 regulation of parvalbumin interneurons in the prefrontal cortex is critical for schizophrenia-like behaviors.Mol Psychiatry2021
34799674Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics.Commun Biol2021
33539344Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder.PLoS Genet2021
33863995FXR1 regulation of parvalbumin interneurons in the prefrontal cortex is critical for schizophrenia-like behaviors.Mol Psychiatry2021
34799674Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics.Commun Biol2021
34044854scGRNom: a computational pipeline of integrative multi-omics analyses for predicting cell-type disease genes and regulatory networks.Genome Med2021
32240163Multiview learning for understanding functional multiomics.PLoS Comput Biol2020
32240163Multiview learning for understanding functional multiomics.PLoS Comput Biol2020
32213348Comparing Technological Development and Biological Evolution from a Network Perspective.Cell Syst2020
32846117RGS6 Mediates Effects of Voluntary Running on Adult Hippocampal Neurogenesis.Cell Rep2020
32728046An integrative ENCODE resource for cancer genomics.Nat Commun2020
32846117RGS6 Mediates Effects of Voluntary Running on Adult Hippocampal Neurogenesis.Cell Rep2020
32728046An integrative ENCODE resource for cancer genomics.Nat Commun2020
32213348Comparing Technological Development and Biological Evolution from a Network Perspective.Cell Syst2020
31420605PKCα is required for Akt-mTORC1 activation in non-small cell lung carcinoma (NSCLC) with EGFR mutation.Oncogene2019
31581742Decoupling of Nrf2 Expression Promotes Mesenchymal State Maintenance in Non-Small Cell Lung Cancer.Cancers (Basel)2019
31888454ManiNetCluster: a novel manifold learning approach to reveal the functional links between gene networks.BMC Genomics2019
31576014Correction: PKCα is required for Akt-mTORC1 activation in non-small cell lung carcinoma (NSCLC) with EGFR mutation.Oncogene2019
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Collaborators

Mark Gerstein
Yale University
Co-authored papers 22
Joel Rozowsky
Co-authored papers 9
Koon-Kiu Yan
Co-authored papers 9
Chao Cheng
Baylor College of Medicine
Co-authored papers 7
Shuang Liu
Co-authored papers 7
Kevin P White
Co-authored papers 5
Hyejung Won
Co-authored papers 5
Daniel H Geschwind
University of California los angeles
Co-authored papers 5
Jing Zhang
Co-authored papers 4
Robert R Kitchen
Co-authored papers 4
Shaoke Lou
Co-authored papers 4
Andrew E Jaffe
Co-authored papers 3
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Co-authored papers 3
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Yale School of Medicine
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Declan Clarke
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Mia K Markey
The University of Texas at Austin
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Steven E Brenner
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Yale University
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Fei He
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
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Panos Roussos
Co-authored papers 3
James A Knowles
Co-authored papers 3
Yucheng T Yang
Co-authored papers 3
Jonathan Warrell
Co-authored papers 3
Michael J Gandal
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 3
Peter J Bickel
Co-authored papers 2
Mengling Liu
NYU Grossman School of Medicine
Co-authored papers 2
Donna M Werling
Co-authored papers 2
Release 1.2