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Author Details

Job Dekker
University of Massachusetts Chan Medical School
1996
190
82
Nathan Sheffield (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36564591Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization.Nat Struct Mol Biol2023
37595408Editorial overview: Multiscale regulation of genome folding in space, time, and across the tree of life.Curr Opin Genet Dev2023
37989525Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.Life Sci Alliance2023
37708024Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma.Cell Rep2023
37398486Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis.bioRxiv2023
36564591Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization.Nat Struct Mol Biol2023
36807063Measuring Inaccessible Chromatin Genome-Wide Using Protect-seq.Methods Mol Biol2023
36550219Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers.Nat Struct Mol Biol2023
37059902Author Correction: Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization.Nat Struct Mol Biol2023
36744801Capturing Chromosome Conformation Across Length Scales.J Vis Exp2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37096661Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in <i>Xenopus</i>.Elife2023
37595408Editorial overview: Multiscale regulation of genome folding in space, time, and across the tree of life.Curr Opin Genet Dev2023
37708024Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma.Cell Rep2023
37989525Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells.Life Sci Alliance2023
37059902Author Correction: Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization.Nat Struct Mol Biol2023
37419111Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.Mol Cell2023
37398486Protein arginine methyltransferase 5 (Prmt5) localizes to chromatin loop anchors and modulates expression of genes at TAD boundaries during early adipogenesis.bioRxiv2023
37096661Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in <i>Xenopus</i>.Elife2023
36550219Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers.Nat Struct Mol Biol2023
36807063Measuring Inaccessible Chromatin Genome-Wide Using Protect-seq.Methods Mol Biol2023
36744801Capturing Chromosome Conformation Across Length Scales.J Vis Exp2023
34518339Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions.Cold Spring Harb Perspect Biol2022
36268993Regulation of the mitotic chromosome folding machines.Biochem J2022
36202971CTCF-CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity.Nat Cell Biol2022
35549698Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis.BMC Biol2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
36482254A cohesin traffic pattern genetically linked to gene regulation.Nat Struct Mol Biol2022
34518339Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions.Cold Spring Harb Perspect Biol2022
35304523Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling.Sci Rep2022
35177821Spatial organization of transcribed eukaryotic genes.Nat Cell Biol2022
35549698Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis.BMC Biol2022
35474001Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.Nature2022
36482254A cohesin traffic pattern genetically linked to gene regulation.Nat Struct Mol Biol2022
36202971CTCF-CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity.Nat Cell Biol2022
36268993Regulation of the mitotic chromosome folding machines.Biochem J2022
35177821Spatial organization of transcribed eukaryotic genes.Nat Cell Biol2022
35304523Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling.Sci Rep2022
33351783Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML.JCI Insight2021
33964136Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation.Genome Biol Evol2021
34286910Hi-C 3.0: Improved Protocol for Genome-Wide Chromosome Conformation Capture.Curr Protoc2021
33574602Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics.Nat Genet2021
33927399Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum.Nat Genet2021
34332503Erratum to: Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation.Genome Biol Evol2021
33351783Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML.JCI Insight2021
34406118Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization.Elife2021
34716321Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture.Nat Commun2021
34480151Systematic evaluation of chromosome conformation capture assays.Nat Methods2021
33574602Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics.Nat Genet2021
33927399Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum.Nat Genet2021
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Collaborators

NASA Ames Research Center
Co-authored papers 43
Co-authored papers 25
Co-authored papers 15
Altius Institute for Biomedical Sciences
Co-authored papers 13
Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934
Co-authored papers 11
Nanyang Technological University
Co-authored papers 11
Co-authored papers 10
Center for Epigenomics, University of California San Diego
Co-authored papers 9
Co-authored papers 8
Co-authored papers 8
Co-authored papers 7
Barcelona Institute of Science and Technology
Co-authored papers 7
Stanley Institute for Cognitive Genomics
Co-authored papers 7
Co-authored papers 7
Yale University
Co-authored papers 6
Stanford University
Co-authored papers 6
Universitat Pompeu Fabra (UPF)
Co-authored papers 6
Co-authored papers 6
University of Massachusetts Medical School
Co-authored papers 6
Stanford University.
Co-authored papers 5
Keck School of Medicine of USC
Co-authored papers 5
Center for Genomic & Computational Biology, Duke University
Co-authored papers 5
Merkin Institute for Translational Research, California Institute of Technology
Co-authored papers 5
HudsonAlpha Institute for Biotechnology
Co-authored papers 5
Broad Institute of MIT and Harvard
Co-authored papers 5
Altius Institute for Biomedical Sciences
Co-authored papers 5
Massachusetts Institute of Technology
Co-authored papers 4
Co-authored papers 4
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Johns Hopkins University
Co-authored papers 4