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Author Details

Robert D Finn
European Bioinformatics Institute
1999
129
61
PMIDPaper TitleJournal TitlePublished Year
36318249Ensembl 2023.Nucleic Acids Res2023
36318249Ensembl 2023.Nucleic Acids Res2023
37639475VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.PLoS Comput Biol2023
36959975Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters.Front Bioinform2023
36806692MGnify Genomes: A Resource for Biome-specific Microbial Genome Catalogues.J Mol Biol2023
36477304MGnify: the microbiome sequence data analysis resource in 2023.Nucleic Acids Res2023
37054678Staphylococcal diversity in atopic dermatitis from an individual to a global scale.Cell Host Microbe2023
37639475VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.PLoS Comput Biol2023
37054678Staphylococcal diversity in atopic dermatitis from an individual to a global scale.Cell Host Microbe2023
36959975Exploring microbial functional biodiversity at the protein family level-From metagenomic sequence reads to annotated protein clusters.Front Bioinform2023
36477304MGnify: the microbiome sequence data analysis resource in 2023.Nucleic Acids Res2023
36806692MGnify Genomes: A Resource for Biome-specific Microbial Genome Catalogues.J Mol Biol2023
34798282Metagenomics approach for Polymyxa betae genome assembly enables comparative analysis towards deciphering the intracellular parasitic lifestyle of the plasmodiophorids.Genomics2022
35950838A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications.Gigascience2022
36148301Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics.Front Physiol2022
36400841Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes.Commun Biol2022
36386613MetaGT: A pipeline for <i>de novo</i> assembly of metatranscriptomes with the aid of metagenomic data.Front Microbiol2022
34798282Metagenomics approach for Polymyxa betae genome assembly enables comparative analysis towards deciphering the intracellular parasitic lifestyle of the plasmodiophorids.Genomics2022
34791415Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.Nucleic Acids Res2022
35272717A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae.Microbiome2022
34969981A catalogue of 1,167 genomes from the human gut archaeome.Nat Microbiol2022
34952941Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions.Nat Microbiol2022
35013594Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome.Nat Microbiol2022
34634797The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.Nucleic Acids Res2022
36400841Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes.Commun Biol2022
36148301Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics.Front Physiol2022
35950838A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications.Gigascience2022
36386613MetaGT: A pipeline for <i>de novo</i> assembly of metatranscriptomes with the aid of metagenomic data.Front Microbiol2022
34952941Integrating cultivation and metagenomics for a multi-kingdom view of skin microbiome diversity and functions.Nat Microbiol2022
35013594Publisher Correction: A catalogue of 1,167 genomes from the human gut archaeome.Nat Microbiol2022
35272717A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae.Microbiome2022
34969981A catalogue of 1,167 genomes from the human gut archaeome.Nat Microbiol2022
34791415Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.Nucleic Acids Res2022
34634797The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.Nucleic Acids Res2022
32690973A unified catalog of 204,938 reference genomes from the human gut microbiome.Nat Biotechnol2021
33693712Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.Genome Biol Evol2021
34012005An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.Sci Rep2021
34108470R2DT is a framework for predicting and visualising RNA secondary structure using templates.Nat Commun2021
34196707Erratum to: Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.Genome Biol Evol2021
33606979Massive expansion of human gut bacteriophage diversity.Cell2021
33864056Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data.Nat Protoc2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
33147627Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.Brief Bioinform2021
32690973A unified catalog of 204,938 reference genomes from the human gut microbiome.Nat Biotechnol2021
33125078Pfam: The protein families database in 2021.Nucleic Acids Res2021
33211869Rfam 14: expanded coverage of metagenomic, viral and microRNA families.Nucleic Acids Res2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
33864056Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data.Nat Protoc2021
33693712Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.Genome Biol Evol2021
33606979Massive expansion of human gut bacteriophage diversity.Cell2021
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Collaborators

European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 49
European Bioinformatics Institute
Co-authored papers 22
Co-authored papers 18
European Bioinformatics Institute
Co-authored papers 13
Co-authored papers 13
University of Wurzburg
Co-authored papers 12
Co-authored papers 12
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 11
Co-authored papers 10
University of Southern California
Co-authored papers 9
Co-authored papers 9
Stockholm University
Co-authored papers 9
Co-authored papers 8
Co-authored papers 8
J. Craig Venter Institute
Co-authored papers 8
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 8
University College London, Institute of Structural and Molecular Biology
Co-authored papers 8
Georgetown University Medical Center
Co-authored papers 8
Georgetown University Medical Center
Co-authored papers 8
Co-authored papers 8
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
Co-authored papers 7
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 6
Co-authored papers 6
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 6
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 6
Co-authored papers 6
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 6