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Author Details

Edison Ong
University of Michigan Medical School ann arbor
2014
36
15
PMIDPaper TitleJournal TitlePublished Year
37611082The RSVPreF3-AS01 vaccine elicits broad neutralization of contemporary and antigenically distant respiratory syncytial virus strains.Sci Transl Med2023
34784028Vaccine Design by Reverse Vaccinology and Machine Learning.Methods Mol Biol2022
35649389COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.Brief Bioinform2022
36591248A new framework for host-pathogen interaction research.Front Immunol2022
33398234Computational design of SARS-CoV-2 spike glycoproteins to increase immunogenicity by T cell epitope engineering.Comput Struct Biotechnol J2021
33717026Reverse Microbiomics: A New Reverse Dysbiosis Analysis Strategy and Its Usage in Prediction of Autoantigens and Virulent Factors in Dysbiotic Gut Microbiomes From Rheumatoid Arthritis Patients.Front Microbiol2021
33777032VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms.Front Immunol2021
34696207Identification of <i>Mycobacterium tuberculosis</i> Antigens with Vaccine Potential Using a Machine Learning-Based Reverse Vaccinology Approach.Vaccines (Basel)2021
34009334Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.Nucleic Acids Res2021
31583638Perform Pathway Enrichment Analysis Using ReactomeFIViz.Methods Mol Biol2020
33880140Improvement in the Analysis of Vaccine Adverse Event Reporting System Database.Stat Biopharm Res2020
31923726Epitope promiscuity and population coverage of Mycobacterium tuberculosis protein antigens in current subunit vaccines under development.Infect Genet Evol2020
32096826Vaxign-ML: supervised machine learning reverse vaccinology model for improved prediction of bacterial protective antigens.Bioinformatics2020
32719684COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning.Front Immunol2020
32939051Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project.Nat Rev Nephrol2020
32817949Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering.bioRxiv2020
32533075CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.Sci Data2020
32511333COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning.bioRxiv2020
30365026Victors: a web-based knowledge base of virulence factors in human and animal pathogens.Nucleic Acids Res2019
31865910VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.BMC Bioinformatics2019
31272389OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.BMC Bioinformatics2019
31074377ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions.BMC Bioinformatics2019
29329592The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.J Biomed Semantics2018
29854250Towards precision informatics of pharmacovigilance: OAE-CTCAE mapping and OAE-based representation and analysis of adverse events in patients treated with cancer drugs.AMIA Annu Symp Proc2018
27733503Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.Nucleic Acids Res2017
28230771Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology.Int J Mol Sci2017
28941991Conservation in gene encoding Mycobacterium tuberculosis antigen Rv2660 and a high predicted population coverage of H56 multistage vaccine in South Africa.Infect Genet Evol2017
29123525Identification of New Features from Known Bacterial Protective Vaccine Antigens Enhances Rational Vaccine Design.Front Immunol2017
29322930Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.BMC Bioinformatics2017
29322915Comparison, alignment, and synchronization of cell line information between CLO and EFO.BMC Bioinformatics2017
27570653Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia.AMIA Jt Summits Transl Sci Proc2016
27868103Integrative representations and analyses of vaccine-induced intended protective immunity and unintended adverse events using ontology-based and theory-guided approaches.Glob Vaccines Immunol2016
25844667A scalable method for molecular network reconstruction identifies properties of targets and mutations in acute myeloid leukemia.J Comput Biol2015
26042811Combinations of Kinase Inhibitors Protecting Myoblasts against Hypoxia.PLoS One2015
24961498Prediction of kinase inhibitor response using activity profiling, in vitro screening, and elastic net regression.BMC Syst Biol2014
25029499Identification of drug combinations containing imatinib for treatment of BCR-ABL+ leukemias.PLoS One2014
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Collaborators

University of Michigan Medical School ann arbor
Co-authored papers 30
University of Pennsylvania Perelman School of Medicine
Co-authored papers 5
College of Literature, University of Michigan ann arbor
Co-authored papers 5
School of Pharmaceutical Sciences, Sun Yat-sen University
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 3
Oregon Health and Science University
Co-authored papers 3
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
University of Michigan Medical School ann arbor
Co-authored papers 2
Miller School of Medicine, University of Miami
Co-authored papers 2
and School of Public Health, University of Michigan ann arbor
Co-authored papers 2
International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
Co-authored papers 2
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Institute for Data Science and Computing, University of Miami
Co-authored papers 2
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 2
Washington University School of Medicine
Co-authored papers 1
American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
Co-authored papers 1
Co-authored papers 1
University of Michigan ann arbor
Co-authored papers 1
University at Buffalo
Co-authored papers 1
University of Michigan ann arbor
Co-authored papers 1
European Bioinformatics Institute
Co-authored papers 1
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Knocean Inc.
Co-authored papers 1
Duke University School of Medicine
Co-authored papers 1
Boston University Chobanian & Avedisian School of Medicine, Boston Medical Center
Co-authored papers 1
Co-authored papers 1
University of Washington
Co-authored papers 1
University of Washington
Co-authored papers 1
Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California
Co-authored papers 1