| 37611082 | The RSVPreF3-AS01 vaccine elicits broad neutralization of contemporary and antigenically distant respiratory syncytial virus strains. | Sci Transl Med | 2023 |
| 34784028 | Vaccine Design by Reverse Vaccinology and Machine Learning. | Methods Mol Biol | 2022 |
| 35649389 | COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning. | Brief Bioinform | 2022 |
| 36591248 | A new framework for host-pathogen interaction research. | Front Immunol | 2022 |
| 33398234 | Computational design of SARS-CoV-2 spike glycoproteins to increase immunogenicity by T cell epitope engineering. | Comput Struct Biotechnol J | 2021 |
| 33717026 | Reverse Microbiomics: A New Reverse Dysbiosis Analysis Strategy and Its Usage in Prediction of Autoantigens and Virulent Factors in Dysbiotic Gut Microbiomes From Rheumatoid Arthritis Patients. | Front Microbiol | 2021 |
| 33777032 | VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms. | Front Immunol | 2021 |
| 34696207 | Identification of <i>Mycobacterium tuberculosis</i> Antigens with Vaccine Potential Using a Machine Learning-Based Reverse Vaccinology Approach. | Vaccines (Basel) | 2021 |
| 34009334 | Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning. | Nucleic Acids Res | 2021 |
| 31583638 | Perform Pathway Enrichment Analysis Using ReactomeFIViz. | Methods Mol Biol | 2020 |
| 33880140 | Improvement in the Analysis of Vaccine Adverse Event Reporting System Database. | Stat Biopharm Res | 2020 |
| 31923726 | Epitope promiscuity and population coverage of Mycobacterium tuberculosis protein antigens in current subunit vaccines under development. | Infect Genet Evol | 2020 |
| 32096826 | Vaxign-ML: supervised machine learning reverse vaccinology model for improved prediction of bacterial protective antigens. | Bioinformatics | 2020 |
| 32719684 | COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning. | Front Immunol | 2020 |
| 32939051 | Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. | Nat Rev Nephrol | 2020 |
| 32817949 | Rational Design of SARS-CoV-2 Spike Glycoproteins To Increase Immunogenicity By T Cell Epitope Engineering. | bioRxiv | 2020 |
| 32533075 | CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis. | Sci Data | 2020 |
| 32511333 | COVID-19 coronavirus vaccine design using reverse vaccinology and machine learning. | bioRxiv | 2020 |
| 30365026 | Victors: a web-based knowledge base of virulence factors in human and animal pathogens. | Nucleic Acids Res | 2019 |
| 31865910 | VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions. | BMC Bioinformatics | 2019 |
| 31272389 | OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. | BMC Bioinformatics | 2019 |
| 31074377 | ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions. | BMC Bioinformatics | 2019 |
| 29329592 | The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. | J Biomed Semantics | 2018 |
| 29854250 | Towards precision informatics of pharmacovigilance: OAE-CTCAE mapping and OAE-based representation and analysis of adverse events in patients treated with cancer drugs. | AMIA Annu Symp Proc | 2018 |
| 27733503 | Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration. | Nucleic Acids Res | 2017 |
| 28230771 | Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology. | Int J Mol Sci | 2017 |
| 28941991 | Conservation in gene encoding Mycobacterium tuberculosis antigen Rv2660 and a high predicted population coverage of H56 multistage vaccine in South Africa. | Infect Genet Evol | 2017 |
| 29123525 | Identification of New Features from Known Bacterial Protective Vaccine Antigens Enhances Rational Vaccine Design. | Front Immunol | 2017 |
| 29322930 | Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses. | BMC Bioinformatics | 2017 |
| 29322915 | Comparison, alignment, and synchronization of cell line information between CLO and EFO. | BMC Bioinformatics | 2017 |
| 27570653 | Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia. | AMIA Jt Summits Transl Sci Proc | 2016 |
| 27868103 | Integrative representations and analyses of vaccine-induced intended protective immunity and unintended adverse events using ontology-based and theory-guided approaches. | Glob Vaccines Immunol | 2016 |
| 25844667 | A scalable method for molecular network reconstruction identifies properties of targets and mutations in acute myeloid leukemia. | J Comput Biol | 2015 |
| 26042811 | Combinations of Kinase Inhibitors Protecting Myoblasts against Hypoxia. | PLoS One | 2015 |
| 24961498 | Prediction of kinase inhibitor response using activity profiling, in vitro screening, and elastic net regression. | BMC Syst Biol | 2014 |
| 25029499 | Identification of drug combinations containing imatinib for treatment of BCR-ABL+ leukemias. | PLoS One | 2014 |