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Author Details

Cyriac Kandoth
University of California los angeles
2008
42
32
PMIDPaper TitleJournal TitlePublished Year
35148171Genome Nexus: A Comprehensive Resource for the Annotation and Interpretation of Genomic Variants in Cancer.JCO Clin Cancer Inform2022
34103301Recurrent Mutations in Cyclin D3 Confer Clinical Resistance to FLT3 Inhibitors in Acute Myeloid Leukemia.Clin Cancer Res2021
31763684Poor survival after resection of early gastric cancer: extremes of survivorship analysis reveal distinct genomic profile.Br J Surg2020
30537484GNAQ Mutations in Diffuse and Solitary Choroidal Hemangiomas.Ophthalmology2019
30427539Regional differences in gallbladder cancer pathogenesis: Insights from a multi-institutional comparison of tumor mutations.Cancer2019
29316429Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.Cancer Cell2018
30053901Integrative omics analyses broaden treatment targets in human cancer.Genome Med2018
30205045The Genomic Landscape of Endocrine-Resistant Advanced Breast Cancers.Cancer Cell2018
30064973Genetic and epigenetic evolution as a contributor to WT1-mutant leukemogenesis.Blood2018
29625050Oncogenic Signaling Pathways in The Cancer Genome Atlas.Cell2018
29625057Tumor Evolution and Drug Response in Patient-Derived Organoid Models of Bladder Cancer.Cell2018
29596782Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines.Cell Syst2018
29247016Accelerating Discovery of Functional Mutant Alleles in Cancer.Cancer Discov2018
28810145Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.Cancer Cell2017
26619011Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.Nat Biotechnol2016
25592567Integrative genome-wide analysis of the determinants of RNA splicing in kidney renal clear cell carcinoma.Pac Symp Biocomput2015
26647970A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.Nat Commun2015
26451490Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer.Cell2015
26689913Patterns and functional implications of rare germline variants across 12 cancer types.Nat Commun2015
26158448Genome Modeling System: A Knowledge Management Platform for Genomics.PLoS Comput Biol2015
26147940Transcriptomic Responses of the Heart and Brain to Anoxia in the Western Painted Turtle.PLoS One2015
24448499Integrated analysis of germline and somatic variants in ovarian cancer.Nat Commun2014
25109877Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin.Cell2014
23222849Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma.Genome Res2013
24132290Mutational landscape and significance across 12 major cancer types.Nature2013
24071850Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.Nat Genet2013
24084849Comprehensive identification of mutational cancer driver genes across 12 tumor types.Sci Rep2013
24220575Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif.Nat Commun2013
23636398Integrated genomic characterization of endometrial carcinoma.Nature2013
23634996Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia.N Engl J Med2013
23443460Clonal diversity of recurrently mutated genes in myelodysplastic syndromes.Leukemia2013
23583981Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas.Nat Genet2013
23537068The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.Genome Biol2013
22563071BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.Bioinformatics2012
22759861MuSiC: identifying mutational significance in cancer genomes.Genome Res2012
22722193Whole-genome analysis informs breast cancer response to aromatase inhibition.Nature2012
22817890The origin and evolution of mutations in acute myeloid leukemia.Cell2012
21415852Recurrent DNMT3A mutations in patients with myelodysplastic syndromes.Leukemia2011
21498403PathScan: a tool for discerning mutational significance in groups of putative cancer genes.Bioinformatics2011
20946604A framework for automated enrichment of functionally significant inverted repeats in whole genomes.BMC Bioinformatics2010
21067377DNMT3A mutations in acute myeloid leukemia.N Engl J Med2010
18793465Validation of an NSP-based (negative selection pattern) gene family identification strategy.BMC Bioinformatics2008
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Collaborators

Li Ding
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 22
Michael D McLellan
McDonnell Genome Institute, Washington University in St. Louis
Co-authored papers 15
Elaine R Mardis
The Ohio State University
Co-authored papers 15
Richard K Wilson
The Ohio State University
Co-authored papers 14
Robert S Fulton
McDonnell Genome Institute, Washington University School of Medicine
Co-authored papers 10
Timothy J Ley
Washington University School of Medicine
Co-authored papers 9
Christopher A Miller
Washington University School of Medicine
Co-authored papers 9
Joshua F McMichael
Washington University
Co-authored papers 9
Michael C Wendl
Washington University in St Louis
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Daniel C Koboldt
Institute for Genomic Medicine, Nationwide Children's Hospital
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Charles Lu
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Barry S Taylor
Memorial Sloan Kettering Cancer Center
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Lucinda Fulton
McDonnell Genome Institute, Washington University School of Medicine
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Nikolaus Schultz
Memorial Sloan Kettering Cancer Center
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Amy G Robertson
Present address: Dxige Research Inc.
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Andrew D Cherniack
Dana-Farber Cancer Institute
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Timothy A Graubert
Massachusetts General Hospital
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David E Larson
McDonnell Genome Institute, Washington University School of Medicine
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Qunyuan Zhang
Co-authored papers 6
Matthew J Walter
Washington University School of Medicine in St. Louis
Co-authored papers 6
John F DiPersio
Washington University School of Medicine
Co-authored papers 6
Ken Chen
University of Texas MD Anderson Cancer Center
Co-authored papers 5
Benjamin J Raphael
Princeton University
Co-authored papers 5
Rehan Akbani
The University of Texas MD Anderson Cancer Center
Co-authored papers 5
Katherine A Hoadley
Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill
Co-authored papers 5
Peter W Laird
Van Andel Institute
Co-authored papers 5
Gordon B Mills
Knight Cancer Institute, Oregon Health and Sciences University
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Christopher C Benz
Buck Institute for Research on Aging
Co-authored papers 5
Christina Yau
University of California San Francisco
Co-authored papers 5
Ritika Kundra
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