Author details

Full Name

Joshua L Cherry

Affiliation

National Center for Biotechnology Information, National Institutes of Health

ORCID

Career Start Year

1993

Papers

H Index

Expertise

CM4AI Collaborator

Christopher Churas (CM4AI)

PMID	Paper Title	Journal Title	Published Year
36519847	Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing.	Appl Environ Microbiol	2023
37639445	Accelerating Bayesian inference of dependency between mixed-type biological traits.	PLoS Comput Biol	2023
37216188	T Residues Preceded by Runs of G Are Hotspots of Tâ¿¿G Mutation in Bacteria.	Genome Biol Evol	2023
35891531	Origins and Evolution of Seasonal Human Coronaviruses.	Viruses	2022
35467376	Recent Genetic Changes Affecting Enterohemorrhagic Escherichia coli Causing Recurrent Outbreaks.	Microbiol Spectr	2022
33849975	Extreme C-to-A Hypermutation at a Site of Cytosine-N4 Methylation.	mBio	2021
32044996	Selection-Driven Gene Inactivation in Salmonella.	Genome Biol Evol	2020
30275280	Methylation-Induced Hypermutation in Natural Populations of Bacteria.	J Bacteriol	2018
28231758	A practical exact maximum compatibility algorithm for reconstruction of recent evolutionary history.	BMC Bioinformatics	2017
23115287	Sequential seasonal H1N1 influenza virus infections protect ferrets against novel 2009 H1N1 influenza virus.	J Virol	2013
24189156	Inbreeding and asexuality: a response to Szulkin et al.	Trends Ecol Evol	2013
23436005	Why does a protein's evolutionary rate vary over time?	Genome Biol Evol	2013
22815705	Complex patterns of human antisera reactivity to novel 2009 H1N1 and historical H1N1 influenza strains.	PLoS One	2012
19910385	Highly expressed and slowly evolving proteins share compositional properties with thermophilic proteins.	Mol Biol Evol	2010
21152078	Projection of seasonal influenza severity from sequence and serological data.	PLoS Curr	2010
20884723	Expression level, evolutionary rate, and the cost of expression.	Genome Biol Evol	2010
19468303	Lineage-specific biology revealed by a finished genome assembly of the mouse.	PLoS Biol	2009
20025194	Evolutionary dynamics of N-glycosylation sites of influenza virus hemagglutinin.	PLoS Curr	2009
19498102	The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.	Genome Res	2009
15020490	Selection, subdivision and extinction and recolonization.	Genetics	2004
12807797	Selection in a subdivided population with local extinction and recolonization.	Genetics	2003
12702693	Selection in a subdivided population with dominance or local frequency dependence.	Genetics	2003
12642115	Genome size and operon content.	J Theor Biol	2003
12586727	A diffusion approximation for selection and drift in a subdivided population.	Genetics	2003
12004087	Islands, equilibria, and speciation.	Science	2002
12583576	Deleterious mutation and the evolution of eusociality.	Evolution	2002
10704297	How to make a biological switch.	J Theor Biol	2000
10937215	Genetic and phylogenetic consequences of island biogeography.	Evolution	2000
10556322	The use of modified primers to eliminate cycle sequencing artifacts.	Nucleic Acids Res	1999
10430560	Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences.	Genetics	1999
9755219	Should we expect substitution rate to depend on population size?	Genetics	1998
9660673	Clusters of identical new mutations can not account for the "overdispersed" molecular clock.	Genetics	1998
8020958	Enzyme-linked fluorescent detection for automated multiplex DNA sequencing.	Genomics	1994
7683581	Rapid cycle allele-specific amplification: studies with the cystic fibrosis delta F508 locus.	Clin Chem	1993

1 - 34 of 34

Chase W Nelson

Biodiversity Research Center, Taiwan Institute for Comparative Genomics

Career Start Year 2011

Number of shared co-authors 1

Christian D Huber

Eberly College of Science, Pennsylvania State University

Career Start Year 2007

Number of shared co-authors 0

Philipp W Messer

University of Otago

Career Start Year 2005

Number of shared co-authors 0

Konrad Scheffler

Illumina Inc.

Career Start Year 2005

Number of shared co-authors 0

Ville Mustonen

University of Helsinki

Career Start Year 2004

Number of shared co-authors 2

Alex K Lancaster

Ronin Institute

Career Start Year 2003

Number of shared co-authors 0

Timothy B Sackton

Harvard University

Career Start Year 2002

Number of shared co-authors 11

Katherine S Pollard

Gladstone Institutes

Career Start Year 2002

Number of shared co-authors 12

Ralph Haygood

Ronin Institute for Independent Scholarship

Career Start Year 2002

Number of shared co-authors 4

David Enard

University of Arizona

Career Start Year 2001

Number of shared co-authors 0

Neil Hall

Earlham Institute

Career Start Year 2000

Number of shared co-authors 2

Robert Friedman

University of South Carolina

Career Start Year 2000

Number of shared co-authors 0

Corbin D Jones

University of North Carolina at Chapel Hill

Career Start Year 1998

Number of shared co-authors 7

Lee Murphy

Edinburgh Clinical Research Facility, University of Edinburgh

Career Start Year 1998

Number of shared co-authors 3

David A Liberles

Temple University

Career Start Year 1996

Number of shared co-authors 0

Gil McVean

Big Data Institute, University of Oxford

Career Start Year 1995

Number of shared co-authors 4

Aaron L Halpern

Illumina Inc.

Career Start Year 1995

Number of shared co-authors 13

Martin J Lercher

Institute for Computer Science, Heinrich Heine University

Career Start Year 1994

Number of shared co-authors 0

Erich Bornberg-Bauer

Institute for Evolution and Biodiversity, University of Munster

Career Start Year 1993

Number of shared co-authors 3

Keith A Crandall

US National Museum of Natural History, Smithsonian Institution

Career Start Year 1992

Number of shared co-authors 6

Dmitri A Petrov

Stanford University

Career Start Year 1991

Number of shared co-authors 0

Aviv Bergman

Albert Einstein College of Medicine

Career Start Year 1990

Number of shared co-authors 0

Giddy Landan

Institute of General Microbiology, Kiel University

Career Start Year 1990

Number of shared co-authors 5

Hirohisa Kishino

Chuo University

Career Start Year 1985

Number of shared co-authors 0

John M Hancock

the University of Texas Health Science Center at Houston

Career Start Year 1982

Number of shared co-authors 5

Dan Graur

University of Houston

Career Start Year 1982

Number of shared co-authors 10

Simon Tavar??

Irving Institute for Cancer Dynamics, Columbia University

Career Start Year 1979

Number of shared co-authors 2

Graham Bell

McGill University

Career Start Year 1974

Number of shared co-authors 0

John M Logsdon

University of Iowa

Career Start Year 1971

Number of shared co-authors 3

B Jesse Shapiro

McGill University

Career Start Year 1964

Number of shared co-authors 0

row(s) 1 - 30 of 30

Michael DiCuccio

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 2

Donna R Maglott

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 2

Anastasia N Nikolskaya

Co-authored papers 2

Ted M Ross

Center for Vaccines and Immunology, University of Georgia

Co-authored papers 2

Steve Goldstein

University of Wisconsin-Madison

Co-authored papers 1

Terence D Murphy

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 1

Michael Place

Center for Genomic Science Innovation, University of Wisconsin-Madison

Co-authored papers 1

Kim D Pruitt

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 1

Melissa J Landrum

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 1

Richard Durbin

University of Cambridge

Co-authored papers 1

Ze Cheng

University of Washington School of Medicine

Co-authored papers 1

Manolis Kellis

Massachusetts Institute of Technology

Co-authored papers 1

Chris P Ponting

The University of Edinburgh

Co-authored papers 1

Xinwei She

Rosetta Inpharmatics LLC

Co-authored papers 1

Philippe Lemey

Rega Institute, Laboratory of Clinical and Evolutionary Virology

Co-authored papers 1

Deanna M Church

Present address: Inscripta Inc.

Co-authored papers 1

Brian Teague

Massachusetts Institute of Technology

Co-authored papers 1

Zo?? Birtle

University of Oxford South Parks Road

Co-authored papers 1

David C Schwartz

University of Wisconsin-Madison

Co-authored papers 1

John Wakeley

Co-authored papers 1

Ana C Marques

University of Lausanne

Co-authored papers 1

Michael Schuster

CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences

Co-authored papers 1

Stephen M J Searle

Wellcome Trust Sanger Institute

Co-authored papers 1

Peter A Meric

University of Sydney

Co-authored papers 1

Carol J Bult

The Jackson Laboratory Cancer Center

Co-authored papers 1

Garth R Brown

National Center for Biotechnology Information, National Institutes of Health

Co-authored papers 1

David Haussler

Genomics Institute, University of California Santa Cruz

Co-authored papers 1

Tina Graves

McDonnell Genome Institute, Washington University

Co-authored papers 1

Shiguo Zhou

Sage Science Inc.

Co-authored papers 1

Catherine Snow

Queen Mary University of London

Co-authored papers 1

1 - 30

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