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Author Details

Evgenia V Kriventseva
University of Geneva Medical School
1999
38
27
PMIDPaper TitleJournal TitlePublished Year
36350662OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity.Nucleic Acids Res2023
33196836OrthoDB in 2020: evolutionary and functional annotations of orthologs.Nucleic Acids Res2021
30395283OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.Nucleic Acids Res2019
29220515BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.Mol Biol Evol2018
30014616ACI-1 beta-lactamase is widespread across human gut microbiomes in Negativicutes due to transposons harboured by tailed prophages.Environ Microbiol2018
27899580OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.Nucleic Acids Res2017
25428351OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.Nucleic Acids Res2015
26059717BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.Bioinformatics2015
23180791OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs.Nucleic Acids Res2013
23636946Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.Genome Res2013
20972218OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011.Nucleic Acids Res2011
21292972The ecoresponsive genome of Daphnia pulex.Science2011
21148284Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi.Genome Biol Evol2011
20075255Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.Science2010
18927110miROrtho: computational survey of microRNA genes.Nucleic Acids Res2009
19393040The bovine lactation genome: insights into the evolution of mammalian milk.Genome Biol2009
19390049The genome sequence of taurine cattle: a window to ruminant biology and evolution.Science2009
17947323OrthoDB: the hierarchical catalog of eukaryotic orthologs.Nucleic Acids Res2008
18394580Mapping of small RNAs in the human ENCODE regions.Am J Hum Genet2008
18362917The genome of the model beetle and pest Tribolium castaneum.Nature2008
17510324Genome sequence of Aedes aegypti, a major arbovirus vector.Science2007
18021399Quantification of ortholog losses in insects and vertebrates.Genome Biol2007
17588928Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes.Science2007
17723370Creating hierarchical models of protein families based on Expressed Sequence Tags: the "Sprockets" analysis pipeline.Anal Chim Acta2006
15928082Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories.Proc Natl Acad Sci U S A2005
15899967AnoEST: toward A. gambiae functional genomics.Genome Res2005
12520029Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters.Nucleic Acids Res2003
12615003Increase of functional diversity by alternative splicing.Trends Genet2003
12520037The Proteome Analysis database: a tool for the in silico analysis of whole proteomes.Nucleic Acids Res2003
11847096Interactive InterPro-based comparisons of proteins in whole genomes.Bioinformatics2002
12385985Theoretical analysis of alternative splice forms using computational methods.Bioinformatics2002
12230037Applications of InterPro in protein annotation and genome analysis.Brief Bioinform2002
11125042CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.Nucleic Acids Res2001
11406384Clustering and analysis of protein families.Curr Opin Struct Biol2001
11125045Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.Nucleic Acids Res2001
11159338A collection of well characterised integral membrane proteins.Bioinformatics2000
10563578Statistical analysis of the exon-intron structure of higher and lower eukaryote genes.J Biomol Struct Dyn1999
10544807[Statistical analysis of the exon-intron structure of higher eukaryote genes].Biofizika1999
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Collaborators

University of Geneva Medical School
Co-authored papers 20
University of Lausanne
Co-authored papers 11
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 9
University of Geneva
Co-authored papers 7
The EMBL Outstation - The European Bioinformatics Institute
Co-authored papers 4
University of Missouri
Co-authored papers 4
University of Zurich
Co-authored papers 4
European Bioinformatics Institute
Co-authored papers 4
Co-authored papers 4
The Research Institute of Molecular Pathology
Co-authored papers 4
Co-authored papers 4
University of Wurzburg
Co-authored papers 4
Lawrence Berkeley National Laboratory
Co-authored papers 4
University of Cape Town
Co-authored papers 4
University of Houston
Co-authored papers 4
Lund University
Co-authored papers 4
Baylor College of Medicine
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
Softberry Inc.
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
Oklahoma State University
Co-authored papers 3
Xi'an Jiaotong-Liverpool University
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
Baylor College of Medicine
Co-authored papers 3
Emory University School of Medicine
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3