Skip to Main Content

Author Details

Matthew T Weirauch
University of Cincinnati College of Medicine
2003
166
50
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37645953High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus.bioRxiv2024
37645953High-throughput identification of functional regulatory SNPs in systemic lupus erythematosus.bioRxiv2024
35918104Vitamin D receptor and STAT6 interactome governs oesophageal epithelial barrier responses to IL-13 signalling.Gut2023
35918104Vitamin D receptor and STAT6 interactome governs oesophageal epithelial barrier responses to IL-13 signalling.Gut2023
37745430After the Infection: A Survey of Pathogens and Non-communicable Human Disease.medRxiv2023
37662191Lineage tracing of newly accrued nuclei in skeletal myofibers uncovers distinct transcripts and interplay between nuclear populations.bioRxiv2023
37995687Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation.Mol Cell2023
37794597Effector memory T cells induce innate inflammation by triggering DNA damage and a non-canonical STING pathway in dendritic cells.Cell Rep2023
37031202Single cell transcriptomic analysis of HPV16-infected epithelium identifies a keratinocyte subpopulation implicated in cancer.Nat Commun2023
36585519Gene-environment interactions and their impact on human health.Genes Immun2023
36824978Macrophage epigenetic memories of early life injury drive neonatal nociceptive priming.bioRxiv2023
37337107Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy.Nat Genet2023
36949074A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth.Nat Commun2023
37455310A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth.BMC Med2023
37114997Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data.Nucleic Acids Res2023
37531635VExD: a curated resource for human gene expression alterations following viral infection.G3 (Bethesda)2023
36719906maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.PLoS Comput Biol2023
37662191Lineage tracing of newly accrued nuclei in skeletal myofibers uncovers distinct transcripts and interplay between nuclear populations.bioRxiv2023
37794597Effector memory T cells induce innate inflammation by triggering DNA damage and a non-canonical STING pathway in dendritic cells.Cell Rep2023
37745430After the Infection: A Survey of Pathogens and Non-communicable Human Disease.medRxiv2023
37995687Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation.Mol Cell2023
37531635VExD: a curated resource for human gene expression alterations following viral infection.G3 (Bethesda)2023
37455310A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth.BMC Med2023
36949074A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth.Nat Commun2023
37114997Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data.Nucleic Acids Res2023
37337107Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy.Nat Genet2023
37031202Single cell transcriptomic analysis of HPV16-infected epithelium identifies a keratinocyte subpopulation implicated in cancer.Nat Commun2023
36719906maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.PLoS Comput Biol2023
36585519Gene-environment interactions and their impact on human health.Genes Immun2023
36824978Macrophage epigenetic memories of early life injury drive neonatal nociceptive priming.bioRxiv2023
34111451TSLP disease-associated genetic variants combined with airway TSLP expression influence asthma risk.J Allergy Clin Immunol2022
35595084Multiancestral polygenic risk score for pediatric asthma.J Allergy Clin Immunol2022
35388006Lupus enhancer risk variant causes dysregulation of IRF8 through cooperative lncRNA and DNA methylation machinery.Nat Commun2022
35576187Epigenetic and transcriptional dysregulation in CD4+ T cells in patients with atopic dermatitis.PLoS Genet2022
36000549β-catenin cancer-enhancing genomic regions axis is involved in the development of fibrolamellar hepatocellular carcinoma.Hepatol Commun2022
35863348"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.Mol Cell2022
36253972Frontotemporal degeneration genetic risk loci and transcription regulation as a possible mechanistic link to disease risk.Medicine (Baltimore)2022
34111451TSLP disease-associated genetic variants combined with airway TSLP expression influence asthma risk.J Allergy Clin Immunol2022
35252945CASCADE: high-throughput characterization of regulatory complex binding altered by non-coding variants.Cell Genom2022
35263148Blocking UBE2N abrogates oncogenic immune signaling in acute myeloid leukemia.Sci Transl Med2022
35576187Epigenetic and transcriptional dysregulation in CD4+ T cells in patients with atopic dermatitis.PLoS Genet2022
35595084Multiancestral polygenic risk score for pediatric asthma.J Allergy Clin Immunol2022
35388006Lupus enhancer risk variant causes dysregulation of IRF8 through cooperative lncRNA and DNA methylation machinery.Nat Commun2022
36000549β-catenin cancer-enhancing genomic regions axis is involved in the development of fibrolamellar hepatocellular carcinoma.Hepatol Commun2022
35863348"Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes.Mol Cell2022
36253972Frontotemporal degeneration genetic risk loci and transcription regulation as a possible mechanistic link to disease risk.Medicine (Baltimore)2022
35252945CASCADE: high-throughput characterization of regulatory complex binding altered by non-coding variants.Cell Genom2022
35263148Blocking UBE2N abrogates oncogenic immune signaling in acute myeloid leukemia.Sci Transl Med2022
33382170Second-hand smoke and NFE2L2 genotype interaction increases paediatric asthma risk and severity.Clin Exp Allergy2021
34294116Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri.BMC Biol2021
  • 1 - 50 of 332

Recommended Authors

Anthony Mathelier
University of Oslo
Career Start Year 2010
Number of shared co-authors 9
Alan P Boyle
University of Michigan ann arbor
Career Start Year 2008
Number of shared co-authors 40
Oriol Fornes
BC Children's Hospital Research Institute, University of British Columbia
Career Start Year 2008
Number of shared co-authors 7
Yue Lu
The University of Texas MD Anderson Cancer Center
Career Start Year 2006
Number of shared co-authors 5
Songjoon Baek
Center for Cancer Research, National Cancer Institute
Career Start Year 2006
Number of shared co-authors 6
David J Arenillas
BC Children's Hospital Research Institute, University of British Columbia
Career Start Year 2005
Number of shared co-authors 7
David L Corcoran
The University of North Carolina at Chapel Hill
Career Start Year 2005
Number of shared co-authors 5
Lingyun Song
Center for Genomic & Computational Biology, Duke University
Career Start Year 2004
Number of shared co-authors 41
Anshul Kundaje
Stanford University.
Career Start Year 2004
Number of shared co-authors 55
Shyam Prabhakar
Genome Institute of Singapore (GIS)
Career Start Year 2004
Number of shared co-authors 12
Manolis Kellis
Massachusetts Institute of Technology
Career Start Year 2003
Number of shared co-authors 113
Michael J Buck
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Career Start Year 2002
Number of shared co-authors 2
Zhaolei Zhang
University of Toronto
Career Start Year 2002
Number of shared co-authors 16
Zhaohui S Qin
Emory University
Career Start Year 2002
Number of shared co-authors 27
Ting Wang
Washington University School of Medicine
Career Start Year 2001
Number of shared co-authors 40
Mikhail G Dozmorov
Virginia Commonwealth University
Career Start Year 2001
Number of shared co-authors 6
Eran Segal
Weizmann Institute of Science
Career Start Year 2001
Number of shared co-authors 20
Tarjei S Mikkelsen
Harvard University, USA Broad Institute, USA Harvard Stem Cell Institute
Career Start Year 2001
Number of shared co-authors 45
Stefan Bekiranov
University of Virginia
Career Start Year 2000
Number of shared co-authors 5
Elia Stupka
Center for Omics Sciences, IRCCS San Raffaele Scientific Institute
Career Start Year 2000
Number of shared co-authors 45
Kai Tan
University of Pennsylvania
Career Start Year 1999
Number of shared co-authors 13
Martin Hirst
University of British Columbia
Career Start Year 1998
Number of shared co-authors 49
Nadav Ahituv
University of California san francisco
Career Start Year 1998
Number of shared co-authors 16
Colin A Semple
Institute of Genetics and Cancer, University of Edinburgh
Career Start Year 1997
Number of shared co-authors 17
Jonathan Schug
University of Pennsylvania Perelman School of Medicine
Career Start Year 1997
Number of shared co-authors 1
Panayiotis V Benos
University of Florida
Career Start Year 1996
Number of shared co-authors 37
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Career Start Year 1994
Number of shared co-authors 15
Wing Hung Wong
Stanford University
Career Start Year 1991
Number of shared co-authors 11
Michael B Eisen
Howard Hughes Medical Institute, University of California Berkeley
Career Start Year 1988
Number of shared co-authors 32
Wyeth W Wasserman
BC Children's Hospital Research Institute, University of British Columbia
Career Start Year 1974
Number of shared co-authors 16

Collaborators

Leah C Kottyan
Cincinnati Children's Hospital Medical Center
Co-authored papers 34
Timothy R Hughes
University of Toronto
Co-authored papers 21
John B Harley
US Department of Veterans Affairs Medical Center
Co-authored papers 13
Lisa J Martin
Co-authored papers 11
Ally Yang
University of Toronto
Co-authored papers 11
Marc E Rothenberg
Cincinnati Children's Hospital Medical Center
Co-authored papers 10
Gurjit K Khurana Hershey
Cincinnati Children's Hospital Medical Center
Co-authored papers 7
Robert M Waterhouse
University of Lausanne
Co-authored papers 6
Markus Friedrich
Wayne State University
Co-authored papers 6
Hugh M Robertson
University of Illinois at Champaign-Urbana
Co-authored papers 6
Ivan Marazzi
Center for Epigenetics and Metabolism, University of California irvine
Co-authored papers 5
Richard A Gibbs
Baylor College of Medicine
Co-authored papers 5
Bahram Namjou
Cincinnati Children's Hospital
Co-authored papers 5
Evgeny M Zdobnov
University of Geneva Medical School
Co-authored papers 5
Joshua M Stuart
University of California at Santa Cruz
Co-authored papers 5
Donna M Muzny
Baylor College of Medicine
Co-authored papers 5
Kim C Worley
Baylor College of Medicine
Co-authored papers 5
John H Werren
University of Rochester
Co-authored papers 5
Ross C Hardison
Co-authored papers 4
Christopher P Childers
USDA-ARS
Co-authored papers 4
Stephen Richards
Baylor College of Medicine
Co-authored papers 4
Monica F Poelchau
USDA Agricultural Research Service
Co-authored papers 4
Quaid Morris
Sloan Kettering Institute
Co-authored papers 4
Michael R Brent
Co-authored papers 4
Sanie Mnaimneh
University of Toronto
Co-authored papers 4
Joel M Guthridge
Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation
Co-authored papers 4
Ady Kendler
Co-authored papers 4
Laura Campisi
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Webb Miller
Co-authored papers 4
Shannon Dugan
Baylor College of Medicine
Co-authored papers 4
Release 1.2