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Author Details

Melissa A Haendel
1996
161
48
PMIDPaper TitleJournal TitlePublished Year
37502882Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests.medRxiv2023
37963467The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease.Med2023
37218289De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.J Am Med Inform Assoc2023
37217471Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.Nat Commun2023
36656776SARS-CoV-2 Reinfection is Preceded by Unique Biomarkers and Related to Initial Infection Timing and Severity: an N3C RECOVER EHR-Based Cohort Study.medRxiv2023
37087110Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.J Am Med Inform Assoc2023
36823605The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.J Biomed Semantics2023
37076585The Ontology of Biological Attributes (OBA)-computational traits for the life sciences.Mamm Genome2023
37196000Phenopacket-tools: Building and validating GA4GH Phenopackets.PLoS One2023
37389415KG-Hub-building and exchanging biological knowledge graphs.Bioinformatics2023
36478394Recommended practices and ethical considerations for natural language processing-assisted observational research: A scoping review.Clin Transl Sci2023
36747660The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences.bioRxiv2023
36793086Coding long COVID: characterizing a new disease through an ICD-10 lens.BMC Med2023
36603014Community risks for SARS-CoV-2 infection among fully vaccinated US adults by rurality: A retrospective cohort study from the National COVID Cohort Collaborative.PLoS One2023
37166330Risk of post-acute sequelae of SARS-CoV-2 infection associated with pre-coronavirus disease obstructive sleep apnea diagnoses: an electronic health record-based analysis from the RECOVER initiative.Sleep2023
37503136The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease.medRxiv2023
35133437Characteristics, Outcomes, and Severity Risk Factors Associated With SARS-CoV-2 Infection Among Children in the US National COVID Cohort Collaborative.JAMA Netw Open2022
35524622Risk of new-onset psychiatric sequelae of COVID-19 in the early and late post-acute phase.World Psychiatry2022
35705716The GA4GH Phenopacket schema defines a computable representation of clinical data.Nat Biotechnol2022
36032983Risk Factors Associated with Post-Acute Sequelae of SARS-CoV-2 in an EHR Cohort: A National COVID Cohort Collaborative (N3C) Analysis as part of the NIH RECOVER program.medRxiv2022
35387429Implementation of Zebrafish Ontologies for Toxicology Screening.Front Toxicol2022
36093353Metformin is Associated with Reduced COVID-19 Severity in Patients with Prediabetes.medRxiv2022
36093345Coding Long COVID: Characterizing a new disease through an ICD-10 lens.medRxiv2022
35442193The Clinical Variant Analysis Tool: Analyzing the evidence supporting reported genomic variation in clinical practice.Genet Med2022
35754516Lumping versus splitting: How to approach defining a disease to enable accurate genomic curation.Cell Genom2022
35570298NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study.Virol J2022
35435957Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.J Am Med Inform Assoc2022
36208225Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.Database (Oxford)2022
35872606Prenatal phenotyping: A community effort to enhance the Human Phenotype Ontology.Am J Med Genet C Semin Med Genet2022
35616100A Simple Standard for Sharing Ontological Mappings (SSSOM).Database (Oxford)2022
36125173Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.Clin Transl Sci2022
35982668Who is pregnant? defining real-world data-based pregnancy episodes in the National COVID Cohort Collaborative (N3C).medRxiv2022
35665012Generalizable Long COVID Subtypes: Findings from the NIH N3C and RECOVER Programs.medRxiv2022
36402838Unifying the identification of biomedical entities with the Bioregistry.Sci Data2022
36400170Metformin is associated with reduced COVID-19 severity in patients with prediabetes.Diabetes Res Clin Pract2022
36380762Post-COVID Phenotypic Manifestations are Associated with New-Onset Psychiatric Disease: Findings from the NIH N3C and RECOVER Studies.medRxiv2022
36910590GA4GH Phenopackets: A Practical Introduction.Adv Genet (Hoboken)2022
35030631Sleep and circadian informatics data harmonization: a workshop report from the Sleep Research Society and Sleep Research Network.Sleep2022
34788203The Effect of the COVID-19 Pandemic on Pulmonary Diagnostic Procedures.Ann Am Thorac Soc2022
35072136GA4GH: International policies and standards for data sharing across genomic research and healthcare.Cell Genom2021
34289339Interpretable prioritization of splice variants in diagnostic next-generation sequencing.Am J Hum Genet2021
33907758NSAID use and clinical outcomes in COVID-19 patients: A 38-center retrospective cohort study.medRxiv2021
33791733Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information.medRxiv2021
33843054Sharing biological data: why, when, and how.FEBS Lett2021
33724192Underrepresentation of Phenotypic Variability of 16p13.11 Microduplication Syndrome Assessed With an Online Self-Phenotyping Tool (Phenotypr): Cohort Study.J Med Internet Res2021
33770077From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences.PLoS Biol2021
34255046Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.JAMA Netw Open2021
34135013Association Between Glucagon-Like Peptide 1 Receptor Agonist and Sodium-Glucose Cotransporter 2 Inhibitor Use and COVID-19 Outcomes.Diabetes Care2021
34341796Children with SARS-CoV-2 in the National COVID Cohort Collaborative (N3C).medRxiv2021
32602379Is authorship sufficient for today's collaborative research? A call for contributor roles.Account Res2021
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American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison
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International Society for Biocuration, Lawrence Berkeley National Laboratory, University of Edinburgh, University of Edinburgh School of Biological Sciences
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William Harvey Research Institute, Queen Mary University of London
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University of Colorado - Anschutz Medical Campus
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Critical Path Institute
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William Harvey Research Institute, Queen Mary University of London
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Brown University, Brown University Warren Alpert Medical School, Dartmouth-Hitchcock Medical Center, Harvard School of Public Health, Johns Hopkins Medicine, Mayo Clinic Minnesota
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Division of Emergency Medicine University of Calgary Calgary Alberta Canada.
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Renaissance Computing Institute, University of North Carolina
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William Harvey Research Institute, Queen Mary University of London
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Lawrence Berkely National Laboratory, Massachusetts Institute of Technology, Princeton University
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University of Colorado Anschutz Medical Campus
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Lawrence Berkeley National Laboratory
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University of North Carolina
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Renaissance Computing Institute, University of North Carolina
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Perth Children's Hospital
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Columbia University
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Stony Brook University, and Stony Brook Cancer Center
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University of Colorado Anschutz Medical Campus
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Adult and Child Center for Outcomes Research and Delivery Science
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Center for the Science of Therapeutics, Broad Institute of MIT and Harvard
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University of Colorado Anschutz Medical Campus
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University of South Dakota
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Institute of Neuroscience, University of Oregon
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University of Colorado Anschutz Medical Campus
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Biodiversity Information Standards, Coastal and Estuarine Research Federation, Oregon State University, Phycological Society of America, Society of Professional Consultants, The Data Detektiv, University of Colorado Anschutz Medical Campus, University of Maryland College Park, Women in the Enterprise of Science and Technology
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King Edward Memorial Hospital
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