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Author Details

Alexej Abyzov
2004
77
33
PMIDPaper TitleJournal TitlePublished Year
37071670Clonally Selected Lines After CRISPR-Cas Editing Are Not Isogenic.2023
37674007Author Correction: Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis.2023
37645832Characterization of enhancer activity in early human neurodevelopment using Massively parallel reporter assay (MPRA) and forebrain organoids.bioRxiv2023
37985666Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases.Sci Data2023
37563294Modeling idiopathic autism in forebrain organoids reveals an imbalance of excitatory cortical neuron subtypes during early neurogenesis.2023
37026484Efficient reconstruction of cell lineage trees for cell ancestry and cancer.2023
36495113Somatic genomic mosaicism in the brain during aging: Scratching the surface.2022
35442945All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.PLoS Computational Biology2022
35809166Postmortem Human Dura Mater Cells Exhibit Phenotypic, Transcriptomic and Genetic Abnormalities that Impact their Use for Disease Modeling.Stem Cell Rev Rep2022
36378632Correction: All2: A tool for selecting mosaic mutations from comprehensive multi-cell comparisons.PLoS Computational Biology2022
34817058CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing.Gigascience2021
33737484Early developmental asymmetries in cell lineage trees in living individuals.Science2021
33737485Landmarks of human embryonic development inscribed in somatic mutations.Science2021
32777815LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads.2021
32622340The role of somatic mosaicism in brain disease.Current Opinion in Genetics and Development2020
32018185Neurological safety of oxaliplatin in patients with uncommon variants in Charcot-Marie-tooth disease genes.J Neurol Sci2020
31787246Combining copy number, methylation markers, and mutations as a panel for endometrial cancer detection via intravaginal tampon collection.Gynecol Oncol2020
32413272Cell Lineage Tracing and Cellular Diversity in Humans.Annual Review of Genomics and Human Genetics2020
32386320Adult diffuse glioma GWAS by molecular subtype identifies variants in D2HGDH and FAM20C.Neuro Oncol2020
33183232SCELLECTOR: ranking amplification bias in single cells using shallow sequencing.BMC Bioinformatics2020
33122304Complex mosaic structural variations in human fetal brains.Genome Res2020
30773596Chromatin organization modulates the origin of heritable structural variations in human genome.Nucleic Acids Research2019
30607001Molecular signatures of multiple myeloma progression through single cell RNA-Seq.Blood Cancer J2019
30864654Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.Nucleic Acids Res2019
30737237Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.Genome Res2019
29453410Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations.Scientific Reports2018
30545853Transcriptome and epigenome landscape of human cortical development modeled in organoids.Science2018
29717444Detection and Quantification of Mosaic Genomic DNA Variation in Primary Somatic Tissues Using ddPCR: Analysis of Mosaic Transposable-Element Insertions, Copy-Number Variants, and Single-Nucleotide Variants.Methods in Molecular Biology2018
29217587Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.Science2018
29467928Inferring modes of evolution from colorectal cancer with residual polyp of origin.Oncotarget2018
28235832One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin.Genome Res2017
28634656Patient-reported (EORTC QLQ-CIPN20) versus physician-reported (CTCAE) quantification of oxaliplatin- and paclitaxel/carboplatin-induced peripheral neuropathy in NCCTG/Alliance clinical trials.Support Care Cancer2017
28450582Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network.Science2017
28418023Human induced pluripotent stem cells for modelling neurodevelopmental disorders.Nature Reviews Neurology2017
28662076Landscape and variation of novel retroduplications in 26 human populations.PLoS Comput Biol2017
28438122Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans.BMC Genomics2017
27567950Colorectal Cancer with Residual Polyp of Origin: A Model of Malignant Transformation.Transl Oncol2016
27089393A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.Nat Commun2016
27216746Elevated variant density around SV breakpoints in germline lineage lends support to error-prone replication hypothesis.Genome Research2016
26763541Testing of candidate single nucleotide variants associated with paclitaxel neuropathy in the trial NCCTG N08C1 (Alliance).Cancer Med2016
26657727Understanding genome structural variations.Oncotarget2016
26710886Single-cell analysis of targeted transcriptome predicts drug sensitivity of single cells within human myeloma tumors.Leukemia2016
26028266Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.Nat Commun2015
25861968MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.Bioinformatics2015
25524895VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications.Bioinformatics2015
26186191FOXG1-Dependent Dysregulation of GABA/Glutamate Neuron Differentiation in Autism Spectrum Disorders.Cell2015
26605881The PsychENCODE project.Nat Neurosci2015
26432246An integrated map of structural variation in 2,504 human genomes.Nature2015
26346554Erratum: analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.Nat Commun2015
23311762Child development and structural variation in the human genome.Child Dev2013
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