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Author Details

Maximilian Haeussler
Genomics Institute, University of California Santa Cruz
2007
59
34
PMIDPaper TitleJournal TitlePublished Year
38030727Identification of constrained sequence elements across 239 primate genomes.Nature2024
37953330The UCSC Genome Browser database: 2024 update.Nucleic Acids Res2024
36420891The UCSC Genome Browser database: 2023 update.Nucleic Acids Res2023
37745597A Meta-Atlas of the Developing Human Cortex Identifies Modules Driving Cell Subtype Specification.bioRxiv2023
37790331Single cell analysis of dup15q syndrome reveals developmental and postnatal molecular changes in autism.bioRxiv2023
36922587Spatial epigenome-transcriptome co-profiling of mammalian tissues.Nature2023
34718705The UCSC Genome Browser database: 2022 update.Nucleic Acids Res2022
36112223Cross-regional homeostatic and reactive glial signatures in multiple sclerosis.Acta Neuropathol2022
36179668Ensembles of endothelial and mural cells promote angiogenesis in prenatal human brain.Cell2022
36241719The dynseq browser track shows context-specific features at nucleotide resolution.Nat Genet2022
33221922The UCSC Genome Browser database: 2021 update.Nucleic Acids Res2021
33851162A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control.bioRxiv2021
33782609User-friendly, scalable tools and workflows for single-cell RNA-seq analysis.Nat Methods2021
33723434Single-cell atlas of early human brain development highlights heterogeneity of human neuroepithelial cells and early radial glia.Nat Neurosci2021
34616060Single-cell epigenomics reveals mechanisms of human cortical development.Nature2021
34536354Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids.Cell Stem Cell2021
34244710UCSC Cell Browser: visualize your single-cell data.Bioinformatics2021
31467448AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature.Genet Med2020
31996853Cell stress in cortical organoids impairs molecular subtype specification.Nature2020
31691824UCSC Genome Browser enters 20th year.Nucleic Acids Res2020
31734746CRISPR off-targets: a question of context.Cell Biol Toxicol2020
32434849AMELIE speeds Mendelian diagnosis by matching patient phenotype and genotype to primary literature.Sci Transl Med2020
30407534The UCSC Genome Browser database: 2019 update.Nucleic Acids Res2019
31316211Neuronal vulnerability and multilineage diversity in multiple sclerosis.Nature2019
30894680Publisher Correction: Federated discovery and sharing of genomic data using Beacons.Nat Biotechnol2019
31097668Single-cell genomics identifies cell type-specific molecular changes in autism.Science2019
29149270ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.Nucleic Acids Res2018
29856954Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis.Cell2018
30069064Registered access: authorizing data access.Eur J Hum Genet2018
29762716CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens.Nucleic Acids Res2018
29651054Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments.Nat Protoc2018
29650551HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo.Genome Res2018
29786090CRISPR off-target analysis in genetically engineered rats and mice.Nat Methods2018
29106570The UCSC Genome Browser database: 2018 update.Nucleic Acids Res2018
27899642The UCSC Genome Browser database: 2017 update.Nucleic Acids Res2017
28341547Evaluation and rational design of guide RNAs for efficient CRISPR/Cas9-mediated mutagenesis in Ciona.Dev Biol2017
29196563Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.Genome Res2017
29217575Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex.Science2017
27210042Genome Editing with CRISPR-Cas9: Can It Get Any Better?J Genet Genomics2016
26590259The UCSC Genome Browser database: 2016 update.Nucleic Acids Res2016
27803196Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.Genome Res2016
27380939Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.Genome Biol2016
25348212Navigating protected genomics data with UCSC Genome Browser in a Box.Bioinformatics2015
25428374The UCSC Genome Browser database: 2015 update.Nucleic Acids Res2015
25294244Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal.Genome Res2015
24270787The UCSC Genome Browser database: 2014 update.Nucleic Acids Res2014
25685613The UCSC Ebola Genome Portal.PLoS Curr2014
25274305An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.Nature2014
23155063The UCSC Genome Browser database: extensions and updates 2013.Nucleic Acids Res2013
22595514Initial deployment of the cardiogenic gene regulatory network in the basal chordate, Ciona intestinalis.Dev Biol2012
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Collaborators

David Haussler
Genomics Institute, University of California Santa Cruz
Co-authored papers 18
William James Kent
Co-authored papers 16
Hiram Clawson
Co-authored papers 14
Angie S Hinrichs
Co-authored papers 14
Ann S Zweig
Co-authored papers 13
Brian T Lee
Genomics Institute, University of California Santa Cruz
Co-authored papers 13
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Co-authored papers 12
Robert M Kuhn
Genomics Institute, University of California Santa Cruz
Co-authored papers 11
Kate R Rosenbloom
Co-authored papers 11
Galt P Barber
Genomics Institute, University of California Santa Cruz
Co-authored papers 11
Donna Karolchik
Co-authored papers 8
Arnold R Kriegstein
University of California san francisco
Co-authored papers 8
Tomasz J Nowakowski
University of California san francisco
Co-authored papers 7
Casey M Bergman
University of Georgia
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Paul Flicek
European Bioinformatics Institute
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Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Co-authored papers 4
Clay Fischer
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Rachel A Harte
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Katrina Learned
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Debbie L C van den Berg
Erasmus University Medical Center
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Gregory E Crawford
Center for Genomic & Computational Biology, Duke University
Co-authored papers 3
Sol Katzman
Co-authored papers 3
Paul Robson
Co-authored papers 3
Parisa Nejad
Co-authored papers 3
Melissa S Cline
Genomics Institute, University of California Santa Cruz
Co-authored papers 3
Fran??ois Guillemot
the Francis Crick Institute
Co-authored papers 3
Ilkka Lappalainen
European Bioinformatics Institute
Co-authored papers 2
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Co-authored papers 2
David Lloyd
European Bioinformatics Institute
Co-authored papers 2
Evan E Eichler
University of Washington
Co-authored papers 2
Release 1.2