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Author Details

Adair L Borges
Innovative Genomics Institute, University of California berkeley
2014
22
12
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37973815Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species.Nat Commun2023
38009936Identification of an anti-CRISPR protein that inhibits the CRISPR-Cas type I-B system in <i>Clostridioides difficile</i>.mSphere2023
34873292Species- and site-specific genome editing in complex bacterial communities.Nat Microbiol2022
37938675Phage-encoded ribosomal protein S21 expression is linked to late-stage phage replication.ISME Commun2022
35389256Distinct Subcellular Localization of a Type I CRISPR Complex and the Cas3 Nuclease in Bacteria.J Bacteriol2022
35618772Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes.Nat Microbiol2022
36175428Experimental validation that human microbiome phages use alternative genetic coding.Nat Commun2022
34244437How to train your bacteriophage.Proc Natl Acad Sci U S A2021
33544853Mobile element warfare via CRISPR and anti-CRISPR in Pseudomonas aeruginosa.Nucleic Acids Res2021
33616441The Art of Being Single.CRISPR J2021
34386733Closely related Lak megaphages replicate in the microbiomes of diverse animals.iScience2021
32203410Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity.Nat Microbiol2020
32047285Author Correction: Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.Nat Microbiol2020
32728052Machine-learning approach expands the repertoire of anti-CRISPR protein families.Nat Commun2020
31332386Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.Nat Microbiol2019
31809194A Type IV-A CRISPR-Cas System in <i>Pseudomonas aeruginosa</i> Mediates RNA-Guided Plasmid Interference <i>In Vivo</i>.CRISPR J2019
31474367Anti-CRISPR-Associated Proteins Are Crucial Repressors of Anti-CRISPR Transcription.Cell2019
30033364Bacteriophage Cooperation Suppresses CRISPR-Cas3 and Cas9 Immunity.Cell2018
30190308Discovery of widespread type I and type V CRISPR-Cas inhibitors.Science2018
28749735The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs.Annu Rev Virol2017
24496792Differential locus expansion distinguishes Toxoplasmatinae species and closely related strains of Toxoplasma gondii.mBio2014
25280815Hammondia hammondi harbors functional orthologs of the host-modulating effectors GRA15 and ROP16 but is distinguished from Toxoplasma gondii by a unique transcriptional profile.Eukaryot Cell2014
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Collaborators

Joseph Bondy-Denomy
University of California san francisco
Co-authored papers 12
Simon Roux
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Jennifer A Doudna
Innovative Genomics Institute, University of California berkeley
Co-authored papers 2
Axel Visel
Co-authored papers 2
Tanja Woyke
Co-authored papers 2
Alan R Davidson
University of Toronto, University Avenue
Co-authored papers 2
Nikos C Kyrpides
Co-authored papers 2
Emiley A Eloe-Fadrosh
DOE Joint Genome Institute, Lawrence Berkeley National Laboratory
Co-authored papers 2
Benjamin P Kleinstiver
Center for Genomic Medicine, Massachusetts General Hospital
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Sabrina Y Stanley
University of Toronto, University Avenue
Co-authored papers 1
Adam M Deutschbauer
Lawrence Berkeley National Laboratory
Co-authored papers 1
Benjamin J Rauch
Portland State University
Co-authored papers 1
Rodolphe Barrangou
Innovative Genomics Institute, University of California berkeley
Co-authored papers 1
Alexander Crits-Christoph
University of California berkeley
Co-authored papers 1
Kuei-Ho Chen
The J. David Gladstone Institutes
Co-authored papers 1
J Keith Joung
Massachusetts General Hospital
Co-authored papers 1
Danielle L Swaney
J. David Gladstone Institutes
Co-authored papers 1
Nicola Segata
University of Trento
Co-authored papers 1
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