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Author Details

Hans J Vogel
University of Calgary
1979
599
109
PMIDPaper TitleJournal TitlePublished Year
36939013A primary cell-based <i>in</i> <i>vitro</i> model of the human small intestine reveals host olfactomedin 4 induction in response to <i>Salmonella</i> Typhimurium infection.Gut Microbes2023
37758724The Dictyostelium discoideum FimA protein, unlike yeast and plant fimbrins, is regulated by calcium similar to mammalian plastins.Sci Rep2023
35778499Metabolomics in pediatric lower respiratory tract infections and sepsis: a literature review.Pediatr Res2023
37022171Gut Microbiota Contribution to Weight-Independent Glycemic Improvements after Gastric Bypass Surgery.Microbiol Spectr2023
37329221Clinical and metabolomic characterization of Brivanib-Induced hypertension in metastatic colorectal cancer.Cancer Med2023
36751130A combined computational-biophysical approach to understanding fatty acid binding to FABP7.Biophys J2023
36750372Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON web server.RNA2023
36880749Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads.mBio2023
36604543RNA recording in single bacterial cells using reprogrammed tracrRNAs.Nat Biotechnol2023
36495446A MATQ-seq-Based Protocol for Single-Cell RNA-seq in Bacteria.Methods Mol Biol2023
35323670Comparison of Two Automated Targeted Metabolomics Programs to Manual Profiling by an Experienced Spectroscopist for <sup>1</sup>H-NMR Spectra.Metabolites2022
35695420Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli.mSystems2022
35689330Small RNAs in the Antarctic bacterium Pseudomonas extremaustralis responsive to oxygen availability and oxidative stress.Environ Microbiol Rep2022
35388892An overview of gene regulation in bacteria by small RNAs derived from mRNA 3' ends.FEMS Microbiol Rev2022
35357498The DNA polymerase of bacteriophage YerA41 replicates its T-modified DNA in a primer-independent manner.Nucleic Acids Res2022
35687096Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli.Nucleic Acids Res2022
35449155Microscale carbon distribution around pores and particulate organic matter varies with soil moisture regime.Nat Commun2022
37223738Grad-seq analysis of <i>Enterococcus faecalis</i> and <i>Enterococcus faecium</i> provides a global view of RNA and protein complexes in these two opportunistic pathogens.Microlife2022
37223351Ushering in a new era of single-cell transcriptomics in bacteria.Microlife2022
36676949Maternal Metabolites Indicative of Mental Health Status during Pregnancy.Metabolites2022
35864246TFEB induces mitochondrial itaconate synthesis to suppress bacterial growth in macrophages.Nat Metab2022
36328526Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq).RNA2022
36229039INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors.Nucleic Acids Res2022
36223745An unusual mode of baseline translation adjusts cellular protein synthesis capacity to metabolic needs.Cell Rep2022
36161895Expanding the genetic toolkit helps dissect a global stress response in the early-branching species <i>Fusobacterium nucleatum</i>.Proc Natl Acad Sci U S A2022
36120057Three-Dimensional Structure of the Antimicrobial Peptide Cecropin P1 in Dodecylphosphocholine Micelles and the Role of the C-Terminal Residues.ACS Omega2022
34890582Simultaneous binding of the N- and C-terminal cytoplasmic domains of aquaporin 4 to calmodulin.Biochim Biophys Acta Biomembr2022
35188077Innovative developments and emerging technologies in RNA therapeutics.RNA Biol2022
35063132Global RNA interactome of Salmonella discovers a 5' UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity.Mol Cell2022
35028011Early detection of treatment futility in patients with metastatic colorectal cancer.Oncotarget2022
32871093Antibiofilm activity of lactoferrin-derived synthetic peptides against <i>Pseudomonas aeruginosa</i> PAO1.Biochem Cell Biol2021
37223250Grad-seq identifies KhpB as a global RNA-binding protein in <i>Clostridioides difficile</i> that regulates toxin production.Microlife2021
33792881Analysis of the RNA and Protein Complexome by Grad-seq.Methods Mol Biol2021
33597744Cross-species RNA-seq for deciphering host-microbe interactions.Nat Rev Genet2021
33849070Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics.Nucleic Acids Res2021
33712513Harnessing the Benefits of Neuroinflammation: Generation of Macrophages/Microglia with Prominent Remyelinating Properties.J Neurosci2021
33898526The World of Stable Ribonucleoproteins and Its Mapping With Grad-Seq and Related Approaches.Front Mol Biosci2021
33617378Lactoferrin extends its reach into South America.Biochem Cell Biol2021
33563827A Grad-seq View of RNA and Protein Complexes in Pseudomonas aeruginosa under Standard and Bacteriophage Predation Conditions.mBio2021
33535041MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT.Cell Rep2021
33692654The multidimensionality of soil macroecology.Glob Ecol Biogeogr2021
33529033Maternal and Cord Blood Metabolite Associations with Gestational Weight Gain and Pregnancy Health Outcomes.J Proteome Res2021
33581614Multimodal peripheral fluid biomarker analysis in clinically isolated syndrome and early multiple sclerosis.Mult Scler Relat Disord2021
34497069Scanning mutagenesis of RNA-binding protein ProQ reveals a quality control role for the Lon protease.RNA2021
34542008SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of <i>Salmonella</i>-containing vacuoles <i>in vivo</i>.Gut Microbes2021
34476238An Integrative Approach to Determine 3D Protein Structures Using Sparse Paramagnetic NMR Data and Physical Modeling.Front Mol Biosci2021
34677379Metabolomics and Inflammatory Mediator Profiling for the Differentiation of Life-Threatening and Non-Severe Appendicitis in the Pediatric Population.Metabolites2021
34131082An RNA-centric global view of <i>Clostridioides difficile</i> reveals broad activity of Hfq in a clinically important gram-positive bacterium.Proc Natl Acad Sci U S A2021
33939833In vivo targets of Salmonella FinO include a FinP-like small RNA controlling copy number of a cohabitating plasmid.Nucleic Acids Res2021
34097313Seminal plasma metabolomics reveals lysine and serine dysregulation as unique features distinguishing between prostate cancer tumors of Gleason grades 6 and 7.Prostate2021
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Collaborators

Aalim M Weljie
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 36
Oliver F Bathe
Cumming School of Medicine, University of Calgary
Co-authored papers 9
Farshad Farshidfar
Cumming School of Medicine, University of Calgary
Co-authored papers 6
Malvika Sharan
The Alan Turing Institute
Co-authored papers 4
Peter F Stadler
Co-authored papers 4
Heather Gordish-Dressman
Co-authored papers 2
Susan Gottesman
Co-authored papers 2
Sachin Yende
Clinical Research
Co-authored papers 2
Aldrin V Gomes
Co-authored papers 2
Derek C Angus
University of Pittsburgh Medical Center
Co-authored papers 2
David S Wishart
University of Alberta
Co-authored papers 2
Lillian L Siu
Princess Margaret Cancer Centre, University Ave
Co-authored papers 2
Jörg Hackermüller
Co-authored papers 2
Joseph M Devaney
Co-authored papers 2
T Hofmann
University of Toronto
Co-authored papers 2
Robert E W Hancock
University of British Columbia
Co-authored papers 2
Christopher Funk
University of Colorado School of Medicine
Co-authored papers 1
Maria J Martin
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Christophe Dessimoz
University of Lausanne
Co-authored papers 1
Kai Hakala
University of Turku
Co-authored papers 1
Domenico Cozzetto
Imperial College London
Co-authored papers 1
Amos Stern
Life Science Institute
Co-authored papers 1
Shanshan Zhang
Temple University
Co-authored papers 1
Marina Marcet-Houben
Institute for Research in Biomedicine (IRB)
Co-authored papers 1
Carol A Gross
University of California san francisco
Co-authored papers 1
Pooya Zakeri
Aarhus University
Co-authored papers 1
Alfredo Benso
Italy Consorzio Interuniversitario Nazionale per l'Informatica
Co-authored papers 1
Federico Minneci
University College London
Co-authored papers 1
Elena Cibri??n-Uhalte
European Bioinformatics Institute
Co-authored papers 1
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 1
Release 1.2