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Author Details

Huaiyu Mi
University of Southern California
1995
54
35
PMIDPaper TitleJournal TitlePublished Year
36350672InterPro in 2022.Nucleic Acids Res2023
36350672InterPro in 2022.Nucleic Acids Res2023
37012250PEACOCK: a machine learning approach to assess the validity of cell type-specific enhancer-gene regulatory relationships.NPJ Syst Biol Appl2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
37012250PEACOCK: a machine learning approach to assess the validity of cell type-specific enhancer-gene regulatory relationships.NPJ Syst Biol Appl2023
36866529The Gene Ontology knowledgebase in 2023.Genetics2023
34717010PANTHER: Making genome-scale phylogenetics accessible to all.Protein Sci2022
35640593Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.Nucleic Acids Res2022
34717010PANTHER: Making genome-scale phylogenetics accessible to all.Protein Sci2022
35640593Annotation Query (AnnoQ): an integrated and interactive platform for large-scale genetic variant annotation.Nucleic Acids Res2022
33290554PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.Nucleic Acids Res2021
33964129Reactome and the Gene Ontology: digital convergence of data resources.Bioinformatics2021
33600408Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees.PLoS Comput Biol2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
33290554PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.Nucleic Acids Res2021
33600408Bayesian parameter estimation for automatic annotation of gene functions using observational data and phylogenetic trees.PLoS Comput Biol2021
33964129Reactome and the Gene Ontology: digital convergence of data resources.Bioinformatics2021
33156333The InterPro protein families and domains database: 20 years on.Nucleic Acids Res2021
33320871PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence.PLoS One2020
33392435PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference.Plant Direct2020
33320871PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence.PLoS One2020
33392435PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference.Plant Direct2020
30407594PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.Nucleic Acids Res2019
30407594PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.Nucleic Acids Res2019
30398656InterPro in 2019: improving coverage, classification and access to protein sequence annotations.Nucleic Acids Res2019
31171447SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse.Neuron2019
30804569Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).Nat Protoc2019
31199769Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.J Integr Bioinform2019
31548717Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.Nat Genet2019
31548717Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.Nat Genet2019
31199769Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.J Integr Bioinform2019
30804569Protocol Update for large-scale genome and gene function analysis with the PANTHER classification system (v.14.0).Nat Protoc2019
31171447SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse.Neuron2019
30398656InterPro in 2019: improving coverage, classification and access to protein sequence annotations.Nucleic Acids Res2019
30117501Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).Stand Genomic Sci2018
30117501Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).Stand Genomic Sci2018
27899595PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.Nucleic Acids Res2017
27899635InterPro in 2017-beyond protein family and domain annotations.Nucleic Acids Res2017
27899595PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements.Nucleic Acids Res2017
27899635InterPro in 2017-beyond protein family and domain annotations.Nucleic Acids Res2017
28025345Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.Database (Oxford)2016
26578592PANTHER version 10: expanded protein families and functions, and analysis tools.Nucleic Acids Res2016
28025345Large-scale inference of gene function through phylogenetic annotation of Gene Ontology terms: case study of the apoptosis and autophagy cellular processes.Database (Oxford)2016
26578592PANTHER version 10: expanded protein families and functions, and analysis tools.Nucleic Acids Res2016
25428371The InterPro protein families database: the classification resource after 15 years.Nucleic Acids Res2015
25428371The InterPro protein families database: the classification resource after 15 years.Nucleic Acids Res2015
26528563Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.J Integr Bioinform2015
26528562Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.J Integr Bioinform2015
26528561Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.J Integr Bioinform2015
26528563Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2.J Integr Bioinform2015
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Collaborators

University of Southern California
Co-authored papers 39
carnegie mellon university
Co-authored papers 8
University of Southern California
Co-authored papers 8
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 7
Co-authored papers 6
University College London, Institute of Structural and Molecular Biology
Co-authored papers 6
Westlake University
Co-authored papers 6
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 6
Georgetown University Medical Center
Co-authored papers 6
University of Geneva
Co-authored papers 6
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 6
Babraham Institute
Co-authored papers 6
Lawrence Berkeley National Laboratory
Co-authored papers 6
Co-authored papers 6
European Bioinformatics Institute
Co-authored papers 6
University of Wurzburg
Co-authored papers 6
carnegie mellon university
Co-authored papers 6
Co-authored papers 6
Georgetown University Medical Center
Co-authored papers 5
University of Padova
Co-authored papers 5
European Bioinformatics Institute
Co-authored papers 5
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 5
University College London
Co-authored papers 5
Harvard Medical School
Co-authored papers 5
Co-authored papers 4
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Co-authored papers 4
Lawrence Berkeley National Laboratory
Co-authored papers 4
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Co-authored papers 4