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Author Details

Ryan S Senger
Virginia Tech
2003
50
17
PMIDPaper TitleJournal TitlePublished Year
36874959Analysis of urine Raman spectra differences from patients with diabetes mellitus and renal pathologies.PeerJ2023
37450698Mitochondria Transplantation Mitigates Damage in an In Vitro Model of Renal Tubular Injury and in an Ex Vivo Model of DCD Renal Transplantation.Ann Surg2023
36651906A novel synthetic sRNA promoting protein overexpression in cell-free systems.Biotechnol Prog2023
35102746Disease-Associated Multimolecular Signature in the Urine of Patients with Lyme Disease Detected Using Raman Spectroscopy and Chemometrics.Appl Spectrosc2022
35849572Alterations in the molecular composition of COVID-19 patient urine, detected using Raman spectroscopic/computational analysis.PLoS One2022
36148504Lambda-PCR for precise DNA assembly and modification.Biotechnol Bioeng2022
35102755Raman Spectroscopic Detection and Quantification of Macro- and Microhematuria in Human Urine.Appl Spectrosc2022
33030999ISREA: An Efficient Peak-Preserving Baseline Correction Algorithm for Raman Spectra.Appl Spectrosc2021
31609156Dipstick analysis of urine chemistry: benefits and limitations of dry chemistry-based assays.Postgrad Med2020
31934499The Rametrix<sup>⿢</sup> PRO Toolbox v1.0 for MATLAB<sup>®</sup>.PeerJ2020
31923235Spectral characteristics of urine from patients with end-stage kidney disease analyzed using Raman Chemometric Urinalysis (Rametrix).PLoS One2020
33142112Resolving complex phenotypes with Raman spectroscopy and chemometrics.Curr Opin Biotechnol2020
33194349A synthetic biosensor to detect peroxisomal acetyl-CoA concentration for compartmentalized metabolic engineering.PeerJ2020
32822394Raman chemometric urinalysis (Rametrix) as a screen for bladder cancer.PLoS One2020
32619685Mitigating nutrient accumulation with microalgal growth towards enhanced nutrient removal and biomass production in an osmotic photobioreactor.Water Res2020
32550579A mycotoxin transporter (4D) from a library of deoxynivalenol-tolerant microorganisms.Toxicon X2020
32266111Characterizing glucose, illumination, and nitrogen-deprivation phenotypes of <i>Synechocystis</i> PCC6803 with Raman spectroscopy.PeerJ2020
32266110Characterizing metabolic stress-induced phenotypes of <i>Synechocystis</i> PCC6803 with Raman spectroscopy.PeerJ2020
30849084Identification of soil bacteria capable of utilizing a corn ethanol fermentation byproduct.PLoS One2019
31560690Spectral characteristics of urine specimens from healthy human volunteers analyzed using Raman chemometric urinalysis (Rametrix).PLoS One2019
286322653D printed conformal microfluidics for isolation and profiling of biomarkers from whole organs.Lab Chip2017
28420137Modification of the Mycotoxin Deoxynivalenol Using Microorganisms Isolated from Environmental Samples.Toxins (Basel)2017
26814030Raman spectroscopy detects phenotypic differences among Escherichia coli enriched for 1-butanol tolerance using a metagenomic DNA library.Biotechnol J2016
27423881Characterization of an evolved carotenoids hyper-producer of Saccharomyces cerevisiae through bioreactor parameter optimization and Raman spectroscopy.J Ind Microbiol Biotechnol2016
25848015High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling.Proc Natl Acad Sci U S A2015
26467284Do genome-scale models need exact solvers or clearer standards?Mol Syst Biol2015
24295982Phenotypic profiling of antibiotic response signatures in Escherichia coli using Raman spectroscopy.Antimicrob Agents Chemother2014
25379147A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factories.Comput Struct Biotechnol J2014
24968120Transport of magnesium by a bacterial Nramp-related gene.PLoS Genet2014
25157078Near-real-time analysis of the phenotypic responses of Escherichia coli to 1-butanol exposure using Raman Spectroscopy.J Bacteriol2014
24830736Designing novel cellulase systems through agent-based modeling and global sensitivity analysis.Bioengineered2014
23460591Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.Biotechnol J2013
23417800Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm.Methods Mol Biol2013
22682565Are we ready for genome-scale modeling in plants?Plant Sci2012
22923413Peptide-guided surface-enhanced Raman scattering probes for localized cell composition analysis.Appl Environ Microbiol2012
22583864Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico.BMC Syst Biol2012
21846360Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.BMC Syst Biol2011
20540108Biofuel production improvement with genome-scale models: The role of cell composition.Biotechnol J2010
21584279Computational approaches in metabolic engineering.J Biomed Biotechnol2010
19591186Microarray-based gene expression analysis as a process characterization tool to establish comparability of complex biological products: scale-up of a whole-cell immunotherapy product.Biotechnol Bioeng2009
18054050Prediction of N-linked glycan branching patterns using artificial neural networks.Math Biosci2008
18767191Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems.Biotechnol Bioeng2008
18767192Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.Biotechnol Bioeng2008
18631379The transcriptional program underlying the physiology of clostridial sporulation.Genome Biol2008
17385745Optimization of fed-batch parameters and harvest time of CHO cell cultures for a glycosylated product with multiple mechanisms of inactivation.Biotechnol Bioeng2007
17526797A general framework for designing and validating oligomer-based DNA microarrays and its application to Clostridium acetobutylicum.Appl Environ Microbiol2007
17137317Development of a culture sub-population induction model: signaling pathways synergy and taxanes production by Taxus canadensis.Biotechnol Prog2006
16321048Variable site-occupancy classification of N-linked glycosylation using artificial neural networks.Biotechnol Prog2005
14656163Neural-network-based identification of tissue-type plasminogen activator protein production and glycosylation in CHO cell culture under shear environment.Biotechnol Prog2003
12892482Effect of shear stress on intrinsic CHO culture state and glycosylation of recombinant tissue-type plasminogen activator protein.Biotechnol Prog2003
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Collaborators

Eleftherios T Papoutsakis
Co-authored papers 5
Nathan D Price
Institute for Systems Biology
Co-authored papers 2
Soroush Ardekani
University of California, University of New Mexico
Co-authored papers 1
Roderick V Jensen
Virginia Tech
Co-authored papers 1
Dmitry A Rodionov
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 1
Pan-Jun Kim
Hong Kong Baptist University
Co-authored papers 1
James A Eddy
Benaroya Research Institute at Virginia Mason, Institute for Systems Biology, Sage Bionetworks, University of Illinois at Urbana-Champaign
Co-authored papers 1
Ravali Raju
Biogen Inc.
Co-authored papers 1
Michael W W Adams
University of Georgia
Co-authored papers 1
Nathan E Lewis
University of California San Diego
Co-authored papers 1
Bernhard O Palsson
University of California San Diego
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Jamey D Young
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Hans P Blaschek
University of Illinois at Urbana-Champaign
Co-authored papers 1
Maciek R Antoniewicz
Massachusetts Institute of Technology
Co-authored papers 1
Jens Nielsen
Chalmers University of Technology
Co-authored papers 1
Jason A Papin
University of Virginia
Co-authored papers 1
Caroline B Milne
University of Illinois
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Nicolas Le Nov??re
Babraham Institute
Co-authored papers 1
Chiara Riganti
University of Turin
Co-authored papers 1
Yong-Su Jin
Department of Food Science and Nutrition, University of Illinois at Urbana-Champaign
Co-authored papers 1
Release 1.2