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Author Details

Jose Maria Carazo
National Centre for Biotechnology (CNB CSIC), Campus Universidad Autonoma de Madrid
1983
240
49
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36631472Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials.Nat Commun2023
37758154Local defocus estimation in single particle analysis in cryo-electron microscopy.J Struct Biol2023
37704013A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis.J Struct Biol2023
37893272Performance and Quality Comparison of Movie Alignment Software for Cryogenic Electron Microscopy.Micromachines (Basel)2023
37762547Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing.Int J Mol Sci2023
37326585Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM.Acta Crystallogr D Struct Biol2023
37030648ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis.J Mol Biol2023
36786587A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers.mBio2023
36071808Higher resolution in cryo-EM by the combination of macromolecular prior knowledge and image-processing tools.IUCrJ2022
35785962Emerging Themes in CryoEMâ¿¿Single Particle Analysis Image Processing.Chem Rev2022
35662471BIPSPI+: Mining Type-Specific Datasets of Protein Complexes to Improve Protein Binding Site Prediction.J Mol Biol2022
35568276Cryo-Electron Microscopy: The field of 1,000<sup>+</sup> methods.J Struct Biol2022
35362465On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy.Acta Crystallogr D Struct Biol2022
35362464Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0.Acta Crystallogr D Struct Biol2022
35861059Image processing tools for the validation of CryoEM maps.Faraday Discuss2022
35660516ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation.J Struct Biol2022
36417341Correction: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation.PLoS Pathog2022
32470354Localized reconstruction in Scipion expedites the analysis of symmetry mismatches in cryo-EM data.Prog Biophys Mol Biol2021
33574245Self-assembly and regulation of protein cages from pre-organised coiled-coil modules.Nat Commun2021
33676034DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM.J Struct Biol2021
33727540Author Correction: Self-assembly and regulation of protein cages from pre-organised coiled-coil modules.Nat Commun2021
34469787Cryo-EM density maps adjustment for subtraction, consensus and sharpening.J Struct Biol2021
34804551Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials.IUCrJ2021
34684805Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.Molecules2021
34504018Structural analysis of receptors and actin polarity in platelet protrusions.Proc Natl Acad Sci U S A2021
34076596Principal component analysis is limited to low-resolution analysis in cryoEM.Acta Crystallogr D Struct Biol2021
34324977Identification of incorrectly oriented particles in cryo-EM single particle analysis.J Struct Biol2021
340142783DBionotes COVID-19 edition.Bioinformatics2021
34125107Cryo-EM and Single-Particle Analysis with Scipion.J Vis Exp2021
34267316DeepEMhancer: a deep learning solution for cryo-EM volume post-processing.Commun Biol2021
33950394Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods.Methods Mol Biol2021
33450244ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions.Prog Biophys Mol Biol2021
33397925FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation.Nat Commun2021
33421545Algorithmic robustness to preferred orientations in single particle analysis by CryoEM.J Struct Biol2021
32866476State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps.Prog Biophys Mol Biol2021
31504163Automatic local resolution-based sharpening of cryo-EM maps.Bioinformatics2020
31994878Integration of Cryo-EM Model Building Software in <i>Scipion</i>.J Chem Inf Model2020
31896756Measuring local-directional resolution and local anisotropy in cryo-EM maps.Nat Commun2020
31911170Re-examining the spectra of macromolecules. Current practice of spectral quasi B-factor flattening.J Struct Biol2020
33024955Improvements on marker-free images alignment for electron tomography.J Struct Biol X2020
33063791Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures.IUCrJ2020
32676604Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures.bioRxiv2020
32645578Local resolution estimates of cryoEM reconstructions.Curr Opin Struct Biol2020
32276087MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning.J Struct Biol2020
32270040Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells.Sci Adv2020
30500892Validation of electron microscopy initial models via small angle X-ray scattering curves.Bioinformatics2019
31709061<i>DeepRes</i>: a new deep-learning- and aspect-based local resolution method for electron-microscopy maps.IUCrJ2019
32647820Measurement of local resolution in electron tomography.J Struct Biol X2019
32647812West-Life: A Virtual Research Environment for structural biology.J Struct Biol X2019
32219215The Molecular Control of Calcitonin Receptor Signaling.ACS Pharmacol Transl Sci2019
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Collaborators

Alberto Pascual-Montano
National Center for Biotechnology-CSIC
Co-authored papers 21
Sjors H W Scheres
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 19
Joan Segura
University of California San Diego
Co-authored papers 14
Joachim Frank
Columbia University
Co-authored papers 12
Mikel Valle
Center for Cooperative Research in Biosciences (CIC bioGUNE)
Co-authored papers 12
Jos?? Jes??s Fern??ndez
National Center for Biotechnology, Spanish National Research Council
Co-authored papers 9
Javier A Vel??zquez-Muriel
University of California san francisco
Co-authored papers 8
J. B Heymann
Frederick National Laboratory for Cancer Research, Inc.
Co-authored papers 7
Joaqu??n Dopazo
Andalusian Public Foundation Progress and Health-FPS
Co-authored papers 6
Ivet Bahar
Laufer Center for Physical and Quantitative Biology, Stony Brook University
Co-authored papers 4
Steven J Ludtke
Baylor College of Medicine
Co-authored papers 3
Wah Chiu
Stanford University
Co-authored papers 3
Stephan Nickell
Max Planck Institute of Biochemistry
Co-authored papers 3
Roman Jerala
National Institute of Chemistry
Co-authored papers 3
Ardan Patwardhan
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 3
Dmitri I Svergun
King's College London BHF Centre for Research Excellence
Co-authored papers 3
Miguel Vazquez
Norwegian University of Science and Technology
Co-authored papers 3
Bridget Carragher
Columbia University
Co-authored papers 2
Alan R Fersht
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 2
Arrate Mu??oz-Barrutia
Universidad Carlos III de Madrid
Co-authored papers 2
Jason S McLellan
Co-authored papers 2
Grant J Jensen
California Institute of Technology, Brigham Young University
Co-authored papers 2
Zachary Freyberg
Co-authored papers 2
Yifan Cheng
Quantitative Bioscience Institute, University of California san francisco
Co-authored papers 2
Wolfgang Baumeister
Max Planck Institute of Biochemistry
Co-authored papers 2
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 2
Florian Beck
Max Planck Institute of Biochemistry
Co-authored papers 2
Manuel Rueda
The Barcelona Institute of Science and Technology
Co-authored papers 1
Dennis Wang
Sheffield Institute of Translational Neuroscience, University of Sheffield
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Jean-Paul Armache
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