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Author Details

Noah Spies
Stanford University
2008
16
14
PMIDPaper TitleJournal TitlePublished Year
32559231A crowdsourced set of curated structural variants for the human genome.PLoS Comput Biol2020
32699374Author Correction: A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
32541955A robust benchmark for detection of germline large deletions and insertions.Nat Biotechnol2020
30737237Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.Genome Res2019
30864654Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.Nucleic Acids Res2019
28714986Genome-wide reconstruction of complex structural variants using read clouds.Nat Methods2017
26772178svclassify: a method to establish benchmark structural variant calls.BMC Genomics2016
27271295Extensive sequencing of seven human genomes to characterize benchmark reference materials.Sci Data2016
25733351Concepts in solid tumor evolution.Trends Genet2015
26286809svviz: a read viewer for validating structural variants.Bioinformatics2015
25871848Constraint and divergence of global gene expression in the mammalian embryo.Elife2015
25918554Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia.Genome Med2015
240728733' UTR-isoform choice has limited influence on the stability and translational efficiency of most mRNAs in mouse fibroblasts.Genome Res2013
20413612Mammalian microRNAs: experimental evaluation of novel and previously annotated genes.Genes Dev2010
19854133Biased chromatin signatures around polyadenylation sites and exons.Mol Cell2009
18776903TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway.Nat Struct Mol Biol2008
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Collaborators

Justin M Zook
National Institute of Standards and Technology
Co-authored papers 7
Marc Salit
Stanford University
Co-authored papers 7
Arend Sidow
Co-authored papers 6
Chunlin Xiao
Chongqing Aier Eye Hospital
Co-authored papers 4
Noah Alexander
David Geffen School of Medicine, university of california los angeles
Co-authored papers 4
Stephen T Sherry
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 3
Christopher E Mason
Feil Family Brain and Mind Research Institute.
Co-authored papers 3
Aaron M Wenger
Stanford School of Medicine
Co-authored papers 3
Mark J P Chaisson
University of Southern California
Co-authored papers 3
Andrew Carroll
Google LLC
Co-authored papers 3
Serafim Batzoglou
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Ali Bashir
Google Accelerated Science Team, Google Inc
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Nancy F Hansen
National Human Genome Research Institute, National Institutes of Health
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John J Farrell
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Jeremiah Wala
The Broad Institute of MIT and Harvard
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Rice University
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Adam M Phillippy
National Human Genome Research Institute, National Institutes of Health
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Alvaro Martinez Barrio
Uppsala University
Co-authored papers 2
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Co-authored papers 2
Noushin Ghaffari
Prairie View A&M University
Co-authored papers 2
Nathan D Olson
National Institute of Standards and Technology
Co-authored papers 2
Adam C English
Baylor College of Medicine Human Genome Sequencing Center
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Christopher B Burge
Co-authored papers 2
Weichen Zhou
Chengdu First People's Hospital
Co-authored papers 2
Jennifer McDaniel
National Institute of Standards and Technology
Co-authored papers 2
Alexandre Rouette
Charles-Bruneau Cancer Center, Centre Hospitalier Universitaire (CHU) Sainte-Justine
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Camir Ricketts
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Ryan E Mills
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Release 1.2