Skip to Main Content

Author Details

Carson Holt
University of Utah
2008
30
19
PMIDPaper TitleJournal TitlePublished Year
38066578Assembly and annotation of 2 high-quality columbid reference genomes from sequencing of a Columba livia ÿ Columba guinea F1 hybrid.G3 (Bethesda)2024
36930644An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.Cell Rep2023
37873124Assembly and annotation of two high-quality columbid reference genomes from sequencing of a <i>Columba livia</i> x <i>Columba guinea</i> F<sub>1</sub> hybrid.bioRxiv2023
35119225Comprehensive variant calling from whole-genome sequencing identifies a complex inversion that disrupts ZFPM2 in familial congenital diaphragmatic hernia.Mol Genet Genomic Med2022
36379720Rapid genome sequencing identifies a novel de novo <i>SNAP25</i> variant for neonatal congenital myasthenic syndrome.Cold Spring Harb Mol Case Stud2022
34459920Two Genomic Loci Control Three Eye Colors in the Domestic Pigeon (Columba livia).Mol Biol Evol2021
29294048XPAT: a toolkit to conduct cross-platform association studies with heterogeneous sequencing datasets.Nucleic Acids Res2018
30224652Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.Nat Genet2018
29674745Publisher Correction: The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.Nat Genet2018
29701825Predicting gene structure changes resulting from genetic variants via exon definition features.Bioinformatics2018
29358652The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution.Nat Genet2018
29519939Improved Genome Assembly and Annotation for the Rock Pigeon (<i>Columba livia</i>).G3 (Bethesda)2018
28011790High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.Bioinformatics2017
28751502The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae.G3 (Bethesda)2017
25384563Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.Plant Physiol2015
25977371Social evolution. Genomic signatures of evolutionary transitions from solitary to group living.Science2015
24192544WaveCNV: allele-specific copy number alterations in primary tumors and xenograft models from next-generation sequencing.Bioinformatics2014
25501943Genome Annotation and Curation Using MAKER and MAKER-P.Curr Protoc Bioinformatics2014
24653211Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.Genetics2014
24647006Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.Genome Biol2014
24306534MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.Plant Physiol2014
23435085Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.Nat Genet2013
21282631Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).Proc Natl Acad Sci U S A2011
22192575MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.BMC Bioinformatics2011
21347285The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.PLoS Genet2011
21282651Draft genome of the red harvester ant Pogonomyrmex barbatus.Proc Natl Acad Sci U S A2011
20626842Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.Genome Biol2010
20609256The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.BMC Genomics2010
19236712Quantitative measures for the management and comparison of annotated genomes.BMC Bioinformatics2009
18025269MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.Genome Res2008
  • 1 - 30 of 30

Recommended Authors

Marta Gut
Universitat de Barcelona (UB)
Career Start Year 2010
Number of shared co-authors 14
Shaun D Jackman
University of British Columbia
Career Start Year 2009
Number of shared co-authors 4
Aakrosh Ratan
Center for Public Health Genomics, University of Virginia
Career Start Year 2008
Number of shared co-authors 11
Yi Han
Baylor College of Medicine
Career Start Year 2008
Number of shared co-authors 37
Jaebum Kim
Konkuk University
Career Start Year 2007
Number of shared co-authors 32
Benedict Paten
UC Santa Cruz Genomics Institute, University of California
Career Start Year 2005
Number of shared co-authors 19
Daniel R Zerbino
European Bioinformatics Institute
Career Start Year 2005
Number of shared co-authors 5
Jue Ruan
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Career Start Year 2004
Number of shared co-authors 5
Michael C Schatz
Johns Hopkins University
Career Start Year 2004
Number of shared co-authors 33
Jeffrey A Rosenfeld
Cancer Institute of New Jersey
Career Start Year 2004
Number of shared co-authors 3
Brad A Chapman
Harvard T.H. Chan School of Public Health
Career Start Year 2003
Number of shared co-authors 3
Christie L Kovar
Baylor College of Medicine
Career Start Year 2002
Number of shared co-authors 47
Scott J Emrich
The Pennsylvania State University College of Medicine
Career Start Year 2002
Number of shared co-authors 13
Yaron S Butterfield
Brain Tumour Foundation of Canada
Career Start Year 2002
Number of shared co-authors 1
Tyler Alioto
Universitat de Barcelona (UB)
Career Start Year 2001
Number of shared co-authors 17
Jeong-Hyeon Choi
National Marine Biodiversity Institute of Korea
Career Start Year 2000
Number of shared co-authors 25
Michael Brudno
University of Toronto
Career Start Year 2000
Number of shared co-authors 10
Chinnappa D Kodira
GE Global Research Center
Career Start Year 1999
Number of shared co-authors 18
Mark Diekhans
Genomics Institute, University of California Santa Cruz
Career Start Year 1999
Number of shared co-authors 15
Vineet Bafna
University of California San Diego
Career Start Year 1998
Number of shared co-authors 8
Anton Nekrutenko
The Pennsylvania State University, University Park
Career Start Year 1998
Number of shared co-authors 11
Ian T Fiddes
Liver Center and Diabetes Center, University of California san francisco
Career Start Year 1996
Number of shared co-authors 8
Todd J Vision
University of North Carolina
Career Start Year 1995
Number of shared co-authors 2
Ewan Birney
European Bioinformatics Institute
Career Start Year 1992
Number of shared co-authors 20
Kim C Worley
Baylor College of Medicine
Career Start Year 1991
Number of shared co-authors 62
LaDeana W Hillier
University of Washington
Career Start Year 1991
Number of shared co-authors 31
David Haussler
Genomics Institute, University of California Santa Cruz
Career Start Year 1986
Number of shared co-authors 25
James C Mullikin
National Human Genome Research Institute, National Institutes of Health
Career Start Year 1985
Number of shared co-authors 19
Brian J Haas
Broad Institute of MIT and Harvard
Career Start Year 1981
Number of shared co-authors 15
Richard Durbin
University of Cambridge
Career Start Year 1964
Number of shared co-authors 24

Collaborators

Mark Yandell
University of Utah
Co-authored papers 28
Barry Moore
Utah Center for Genetic Discovery, University of Utah
Co-authored papers 6
Sofia M C Robb
Stowers Institute for Medical Research
Co-authored papers 5
Aleksey V Zimin
Center for Computational Biology, Johns Hopkins University
Co-authored papers 5
Hao Hu
Aerospace Center Hospital
Co-authored papers 4
Steven L Salzberg
Center for Computational Biology, Johns Hopkins University
Co-authored papers 4
James A Yorke
University of Maryland, College Park
Co-authored papers 4
Doreen Ware
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 4
Jill L Wegrzyn
University of Connecticut
Co-authored papers 4
Ehab Abouheif
McGill University
Co-authored papers 3
Chris R Smith
Department of Biology Earlham College Richmond Indiana USA.
Co-authored papers 3
Joshua D Gibson
University of California berkeley
Co-authored papers 3
Brian R Johnson
University of California davis
Co-authored papers 3
Darren E Hagen
Oklahoma State University
Co-authored papers 3
Lumi Viljakainen
Ecology and Genetics Research Unit, University of Oulu
Co-authored papers 3
Jay W Kim
University of California at Santa Cruz
Co-authored papers 3
Justin T Reese
Lawrence Berkeley National Laboratory
Co-authored papers 3
Pieter J de Jong
Center for Genetics, Children's Hospital Oakland Research Institute
Co-authored papers 3
Reed M Johnson
The Ohio State University
Co-authored papers 3
Shu Tao
Beckman Research Institute of City of Hope
Co-authored papers 3
Chris Tyler-Smith
Wellcome Sanger Institute
Co-authored papers 3
Rajendhran Rajakumar
Harvard Medical School
Co-authored papers 3
Martin Helmkampf
University of Hawaii at Hilo
Co-authored papers 3
Evan E Eichler
University of Washington
Co-authored papers 3
J??rgen Gadau
Arizona State University
Co-authored papers 3
Carl Baker
University of Washington School of Medicine
Co-authored papers 3
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
Co-authored papers 3
Garret Suen
University of Wisconsin-Madison
Co-authored papers 3
Dan Graur
University of Houston
Co-authored papers 3
Eran Elhaik
Lund University
Co-authored papers 3
Release 1.2