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Author Details

Xingcheng Lin
Massachusetts Institute of Technology
2014
24
12
PMIDPaper TitleJournal TitlePublished Year
37293007Explicit Ion Modeling Predicts Physicochemical Interactions for Chromatin Organization.bioRxiv2023
35974642Contact map dependence of a T-cell receptor binding repertoire.Phys Rev E2022
35794108Ligand-induced transmembrane conformational coupling in monomeric EGFR.Nat Commun2022
36029149Chromatin fiber breaks into clutches under tension and crowding.Nucleic Acids Res2022
34057467Cooperative DNA looping by PRC2 complexes.Nucleic Acids Res2021
36090450Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire.Nat Comput Sci2021
33597548Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface.Nat Commun2021
33871257Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms.J Chem Theory Comput2021
34241389Multiscale modeling of genome organization with maximum entropy optimization.J Chem Phys2021
32396727Protein Structure Prediction in CASP13 Using AWSEM-Suite.J Chem Theory Comput2020
33209327Molecular-replacement phasing using predicted protein structures from <i>AWSEM-Suite</i>.IUCrJ2020
33208532Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin.Proc Natl Acad Sci U S A2020
32931278Protein Structure Refinement Guided by Atomic Packing Frustration Analysis.J Phys Chem B2020
32848159Enhancing intracellular accumulation and target engagement of PROTACs with reversible covalent chemistry.Nat Commun2020
31000596Forging tools for refining predicted protein structures.Proc Natl Acad Sci U S A2019
30813315Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level.Biomolecules2019
30979035Recent Advances in Computational Protocols Addressing Intrinsically Disordered Proteins.Biomolecules2019
29758263PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer.J Mol Biol2018
30240202Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force Fields.J Chem Theory Comput2018
30012616Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill.Proc Natl Acad Sci U S A2018
27797194Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins.J Phys Chem B2017
27541202Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin.J Phys Chem B2016
27148634Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model.J Phys Chem B2016
25082896Order and disorder control the functional rearrangement of influenza hemagglutinin.Proc Natl Acad Sci U S A2014
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Collaborators

Bin Zhang
Massachusetts Institute of Technology
Co-authored papers 5
Shixin Liu
The Rockefeller University
Co-authored papers 2
Rachel Leicher
The Rockefeller University
Co-authored papers 2
Mitchell D Miller
Rice University
Co-authored papers 1
Vladimir N Uversky
Morsani College of Medicine, University of South Florida
Co-authored papers 1
Shwetha Srinivasan
Massachusetts Institute of Technology
Co-authored papers 1
Gabriela S Schlau-Cohen
Massachusetts Institute of Technology Cambridge MA 02139 USA .
Co-authored papers 1
Cecilia Clementi
Co-authored papers 1
Xiaokun Shu
Co-authored papers 1
Xinqiang Ding
Massachusetts Institute of Technology
Co-authored papers 1
Yifeng Qi
Massachusetts Institute of Technology
Co-authored papers 1
Raju Regmi
Massachusetts Institute of Technology
Co-authored papers 1
Andrew P Latham
Massachusetts Institute of Technology, University of California, San Francisco, University of Notre Dame
Co-authored papers 1
George N Phillips
Rice University
Co-authored papers 1
Tom W Muir
Princeton University
Co-authored papers 1
Release 1.2