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Author Details

Brandi L Cantarel
University of Texas Southwestern Medical Center
2006
52
31
PMIDPaper TitleJournal TitlePublished Year
37581937NLRP12 downregulates the Wnt/β-catenin pathway via interaction with STK38 to suppress colorectal cancer.J Clin Invest2023
35134211Racial and Ethnic Differences in Genomic Profiling of Early Onset Colorectal Cancer.J Natl Cancer Inst2022
35616102Multiplex Fragment Analysis for Flexible Detection of All SARS-CoV-2 Variants of Concern.Clin Chem2022
35025877A short plus long-amplicon based sequencing approach improves genomic coverage and variant detection in the SARS-CoV-2 genome.PLoS One2022
35025668ANSWER: Annotation Software for Electronic Reporting.JCO Clin Cancer Inform2022
35136669SCHOOL: Software for Clinical Health in Oncology for Omics Laboratories.J Pathol Inform2022
33473208A pathogenic UFSP2 variant in an autosomal recessive form of pediatric neurodevelopmental anomalies and epilepsy.Genet Med2021
34818533A renal cell carcinoma tumorgraft platform to advance precision medicine.Cell Rep2021
34610790Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses.BMC Genomics2021
34551906Outcome and Immune Correlates of a Phase II Trial of High-Dose Interleukin-2 and Stereotactic Ablative Radiotherapy for Metastatic Renal Cell Carcinoma.Clin Cancer Res2021
34077708Interpretable deep learning uncovers cellular properties in label-free live cell images that are predictive of highly metastatic melanoma.Cell Syst2021
34346772MP44-09â¿¿UNDERSTANDING PRUNE BELLY SYNDROME AT SINGLE CELL RESOLUTION.J Urol2021
33999553A Novel NIPBL-NACC1 Gene Fusion Is Characteristic of the Cholangioblastic Variant of Intrahepatic Cholangiocarcinoma.Am J Surg Pathol2021
32111635Mitochondrial dysfunction during loss of prohibitin 1 triggers Paneth cell defects and ileitis.Gut2020
32045276Assembling and Validating Bioinformatic Pipelines for Next-Generation Sequencing Clinical Assays.Arch Pathol Lab Med2020
33115951Dietary simple sugars alter microbial ecology in the gut and promote colitis in mice.Sci Transl Med2020
30820572Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.Database (Oxford)2019
31524992Using Mothur to Determine Bacterial Community Composition and Structure in 16S Ribosomal RNA Datasets.Curr Protoc Bioinformatics2019
30744677Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn's remission patients despite temporal variations in microbial taxa, genomes, and proteomes.Microbiome2019
28748214Functionally pathogenic <i>EARS2</i> variants in vitro may not manifest a phenotype in vivo.Neurol Genet2017
28472260Whole-Genome Sequencing Accurately Identifies Resistance to Extended-Spectrum β-Lactams for Major Gram-Negative Bacterial Pathogens.Clin Infect Dis2017
28935693A multidimensional blood stimulation assay reveals immune alterations underlying systemic juvenile idiopathic arthritis.J Exp Med2017
29220441Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.Database (Oxford)2017
27111142IL-1 is a critical regulator of group 2 innate lymphoid cell function and plasticity.Nat Immunol2016
27322655Itch inhibits IL-17-mediated colon inflammation and tumorigenesis by ROR-γt ubiquitination.Nat Immunol2016
27259156Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients.Cell2016
27434012Erratum: IL-1 is a critical regulator of group 2 innate lymphoid cell function and plasticity.Nat Immunol2016
26967704Intra-tracheal Administration of Haemophilus influenzae in Mouse Models to Study Airway Inflammation.J Vis Exp2016
27040498Personalized Immunomonitoring Uncovers Molecular Networks that Stratify Lupus Patients.Cell2016
25775034Gut microbiota in multiple sclerosis: possible influence of immunomodulators.J Investig Med2015
26268606Analysis of archived residual newborn screening blood spots after whole genome amplification.BMC Genomics2015
24108330Gene-targeted metagenomic analysis of glucan-branching enzyme gene profiles among human and animal fecal microbiota.ISME J2014
25284151Bacteria from diverse habitats colonize and compete in the mouse gut.Cell2014
24522263Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations.ISME J2014
24511328Characterization of the Asian Citrus Psyllid Transcriptome.J Genomics2014
24725768BAYSIC: a Bayesian method for combining sets of genome variants with improved specificity and sensitivity.BMC Bioinformatics2014
24112474Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation.BMC Genomics2013
22905200Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.PLoS One2012
23209564Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease.PLoS One2012
22719820Complex carbohydrate utilization by the healthy human microbiome.PLoS One2012
22719234Metabolic reconstruction for metagenomic data and its application to the human microbiome.PLoS Comput Biol2012
21536894Obligate biotrophy features unraveled by the genomic analysis of rust fungi.Proc Natl Acad Sci U S A2011
21984758Sparse distance-based learning for simultaneous multiclass classification and feature selection of metagenomic data.Bioinformatics2011
22132090Strategies for metagenomic-guided whole-community proteomics of complex microbial environments.PLoS One2011
20348908Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis.Nature2010
20841432Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes.Genome Res2010
19043404A core gut microbiome in obese and lean twins.Nature2009
19321416Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla.Proc Natl Acad Sci U S A2009
18838391The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.Nucleic Acids Res2009
18025269MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.Genome Res2008
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Collaborators

Claire M Fraser
Institute for Genome Sciences, University of Maryland School of Medicine
Co-authored papers 7
Daniel Weaver
Beltsville Agricultural Research Center, USDA
Co-authored papers 4
Rob Knight
University of California
Co-authored papers 4
Wayne B Hunter
USDA-ARS
Co-authored papers 3
Shannon Johnson
Los Alamos National Laboratory Bioscience division B-6
Co-authored papers 3
Nan Leng
Xijing Hospital, The Fourth Military Medical University
Co-authored papers 3
Surya Saha
Boyce Thompson Institute
Co-authored papers 3
Robert G Shatters
USDA ARS, Subtropical Insects and Horticulture Research Unit
Co-authored papers 3
Justin T Reese
Lawrence Berkeley National Laboratory
Co-authored papers 3
Monica C Munoz-Torres
University of Colorado Anschutz Medical Campus
Co-authored papers 2
Nathan McNeill
Baylor Scott & White Research Institute
Co-authored papers 2
Chao Xing
University of Texas Southwestern Medical Center
Co-authored papers 2
Zachary Moore
is employed by the University of South Alabama
Co-authored papers 2
Christopher P Childers
USDA-ARS
Co-authored papers 2
Teresa D Shippy
Kansas State University
Co-authored papers 2
Stephen Richards
Baylor College of Medicine
Co-authored papers 2
Monica F Poelchau
USDA Agricultural Research Service
Co-authored papers 2
Curtis Huttenhower
Broad Institute of MIT and Harvard
Co-authored papers 2
David R Nelson
University of Tennessee Health Science Center
Co-authored papers 2
Lukas A Mueller
Boyce Thompson Institute (BTI)
Co-authored papers 2
Sherry Miller
Kansas State University
Co-authored papers 2
Susan J Brown
Kansas State University
Co-authored papers 2
Adam C English
Baylor College of Medicine Human Genome Sequencing Center
Co-authored papers 2
Manesh Shah
University of Tennessee Knoxville
Co-authored papers 2
Peter J Turnbaugh
University of California san francisco
Co-authored papers 2
Sofia M C Robb
Stowers Institute for Medical Research
Co-authored papers 1
Jeremy Zucker
Pacific Northwest National Laboratory
Co-authored papers 1
Mathangi Thiagarajan
Co-authored papers 1
Manfred Grabherr
Co-authored papers 1
Chinnappa D Kodira
GE Global Research Center
Co-authored papers 1
Release 1.2